CF417710

Overview
NameCF417710
Unique NameCF417710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11971 contig Csv1_Contig11971:31..742. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CF417710 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 293.508 bits (750), Expect = 7.397e-79
Identity = 149/191 (78.01%), Postives = 162/191 (84.82%), Query Frame = 2
Query:  140 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG 712
            R SP G+L +R + Y               +  K  GGGKITDEFTG G++GQVCQVIGAVVDVRFDEGLPPILTALEV+DH++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRIMNVIGEPIDEKGD+ T H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG
Sbjct:   32 RPSPSGYLFNRAAAYATAAAAKEAAPPAPATG-KATGGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDEKGDITTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG 221          
BLAST of CF417710 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.648e-78
Identity = 148/191 (77.49%), Postives = 160/191 (83.77%), Query Frame = 2
Query:  140 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG 712
            RASPYG+LL+R +EY                     GGGKITDEFTGKG+IGQVCQVIGAVVDVRFDEGLPPILT+LEV+DHS+RLVLEVAQHMGEG+VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR        VIGEPIDE+GD+KT H+LPIHREAPAFV+QATEQQILVTGIKVVDLLAPYQRGG
Sbjct:   41 RASPYGYLLTRAAEYATSAAAAAPPQPPPAKPEGGKGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTSLEVLDHSIRLVLEVAQHMGEGMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRANPWTYHEVIGEPIDERGDIKTSHFLPIHREAPAFVDQATEQQILVTGIKVVDLLAPYQRGG 231          
BLAST of CF417710 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.152e-78
Identity = 149/191 (78.01%), Postives = 163/191 (85.34%), Query Frame = 2
Query:  140 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG 712
            R SP G+L +R + Y               +   K GGGKITDEFTG G+IGQVCQVIGAVVDVRFDEGLPPILTALEV+D+++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVIGEPIDEKGD+KT H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG
Sbjct:   33 RPSPAGYLFNRAAAYASSAAAQAAPATPPPA-TGKTGGGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDNNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDIKTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG 222          
BLAST of CF417710 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.885e-74
Identity = 147/194 (75.77%), Postives = 160/194 (82.47%), Query Frame = 2
Query:  140 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGG---GKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG 712
            RASP G LL+R  +Y               S   K G    GKITDEFTG GSIG+VCQVIGAVVDVRFDEGLPPILTALEV+D+ +RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVIGE IDE+G + T+H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG
Sbjct:   40 RASPKGFLLNRAVQYATSAAAPASQP----STPPKSGSEPSGKITDEFTGAGSIGKVCQVIGAVVDVRFDEGLPPILTALEVLDNQIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVIGEAIDERGPITTDHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG 229          
BLAST of CF417710 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.709e-67
Identity = 123/155 (79.35%), Postives = 141/155 (90.97%), Query Frame = 2
Query:  248 GGGKITDEFTGKGSIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG 712
            G G ITDE TG G+IGQVCQ+IGAVVDV+F+EGLPPI+TALEV+D  +RLVLEVA  +GE  VRTIAMDGTEGLVRGQ+VLNTG+PIT+PVGR TLGRI+NVIGEPID +G++KT+ YLPIHREAP FV+QATEQQILVTGIKVVDLLAPYQ+GG
Sbjct:   66 GKGTITDEKTGAGAIGQVCQIIGAVVDVKFEEGLPPIMTALEVIDFEIRLVLEVAPSLGENTVRTIAMDGTEGLVRGQKVLNTGAPITIPVGRATLGRIINVIGEPIDHRGEIKTDQYLPIHREAPTFVDQATEQQILVTGIKVVDLLAPYQKGG 220          
BLAST of CF417710 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.223e-66
Identity = 129/194 (66.49%), Postives = 153/194 (78.87%), Query Frame = 2
Query:  137 RRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG 712
            R A+P  +LL RV+EY               S       GK T ++ GKG+IG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TGIKVVDLLAPYQRGG
Sbjct:   36 RHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGG 225          
BLAST of CF417710 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.223e-66
Identity = 129/194 (66.49%), Postives = 153/194 (78.87%), Query Frame = 2
Query:  137 RRASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG 712
            R A+P  +LL RV+EY               S       GK T ++ GKG+IG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TGIKVVDLLAPYQRGG
Sbjct:   36 RHAAPCSYLLGRVAEYATSSPASSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGG 225          
BLAST of CF417710 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.181e-66
Identity = 129/192 (67.19%), Postives = 152/192 (79.17%), Query Frame = 2
Query:  143 ASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGSIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG 712
            A+P G LL RV+EY               S       GK T ++ GKG+IG+VCQVIGA+VDVRF+  EGLPPI+T+LEV DH  RLVLEV+ H+G+ VVRTIAMDGTEGLVRG++VLNTG+PITVPVGR TLGRIMNV+GEPIDE+G++KTEHYLPIHR+APA V+ AT Q+IL TGIKVVDLLAPYQRGG
Sbjct:   41 AAPCGTLLGRVAEYSTSSPANSAAP----SSAPAKDEGKKTYDYGGKGAIGRVCQVIGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGG 228          
BLAST of CF417710 vs. ExPASy Swiss-Prot
Match: ATPB_RAT (ATP synthase subunit beta, mitochondrial OS=Rattus norvegicus GN=Atp5b PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.076e-53
Identity = 103/140 (73.57%), Postives = 119/140 (85.00%), Query Frame = 2
Query:  293 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG 712
            GQ+  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTGIKVVDLLAPY +GG
Sbjct:   61 GQIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGG 200          
BLAST of CF417710 vs. ExPASy Swiss-Prot
Match: ATPB_MOUSE (ATP synthase subunit beta, mitochondrial OS=Mus musculus GN=Atp5b PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 3.129e-53
Identity = 102/140 (72.86%), Postives = 119/140 (85.00%), Query Frame = 2
Query:  293 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGG 712
            G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + EQ+ILVTGIKVVDLLAPY +GG
Sbjct:   61 GRIVAVIGAVVDVQFDEGLPPILNALEVQGRDSRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGG 200          
The following BLAST results are available for this feature:
BLAST of CF417710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPBM_ORYSJ7.397e-7978.01ATP synthase subunit beta, mitochondrial OS=Oryza ... [more]
ATPBM_HEVBR1.648e-7877.49ATP synthase subunit beta, mitochondrial OS=Hevea ... [more]
ATPBM_MAIZE2.152e-7878.01ATP synthase subunit beta, mitochondrial OS=Zea ma... [more]
ATPBM_NICPL1.885e-7475.77ATP synthase subunit beta, mitochondrial OS=Nicoti... [more]
ATPBM_DAUCA1.709e-6779.35ATP synthase subunit beta, mitochondrial OS=Daucus... [more]
ATPBN_ARATH3.223e-6666.49ATP synthase subunit beta-2, mitochondrial OS=Arab... [more]
ATPBM_ARATH3.223e-6666.49ATP synthase subunit beta-1, mitochondrial OS=Arab... [more]
ATPBO_ARATH7.181e-6667.19ATP synthase subunit beta-3, mitochondrial OS=Arab... [more]
ATPB_RAT1.076e-5373.57ATP synthase subunit beta, mitochondrial OS=Rattus... [more]
ATPB_MOUSE3.129e-5372.86ATP synthase subunit beta, mitochondrial OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-640 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417710 ID=CF417710; Name=CF417710; organism=Citrus sinensis; type=EST; length=712bp
TCTCATTCTCTCAACATTGAAGCCCTGACCAATGGCTTCACGTAGACTCC
TATCATCTCTCCTTCGCTCATCTGTCCGCCGATCTCCCTCCAAATCTTCG
TTTTCTAACTCATCTGTGTTCTCTCCTGCCTCCACGCGCCGCGCGTCTCC
TTATGGGCACCTCCTCTCGCGCGTCTCAGAGTACGCGACCTCAGCAGCCG
CCACTGCCCCACCGGCACAGACTCCGAAGTCGGATGTAAAGAAAGGCGGC
GGTGGTAAAATCACCGATGAGTTTACTGGAAAGGGCTCGATCGGTCAGGT
TTGTCAGGTCATCGGTGCCGTCGTTGATGTCAGATTTGACGAGGGGTTGC
CTCCGATTTTGACCGCGCTTGAAGTGGTAGATCACTCGGTTCGGTTAGTG
CTTGAGGTGGCTCAGCACATGGGTGAGGGTGTTGTTAGGACTATTGCTAT
GGATGGAACTGAAGGGTTGGTTCGTGGCCAGCGCGTGCTCAATACTGGCT
CTCCAATCACTGTACCTGTGGGGAGAGTTACTCTGGGTCGTATTATGAAT
GTCATTGGAGAGCCTATTGATGAGAAAGGCGATCTCAAAACTGAACATTA
CTTGCCCATCCACAGAGAGGCTCCAGCATTCGTTGAACAGGCAACTGAAC
AACAGATTCTAGTCACTGGCATCAAGGTCGTTGATCTCCTTGCTCCATAC
CAAAGAGGAGGG
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