CF417744

Overview
NameCF417744
Unique NameCF417744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5239 contig Csv1_Contig5239:296..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 6.135e-78
Identity = 160/210 (76.19%), Postives = 160/210 (76.19%), Query Frame = 1
Query:   70 FVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            FV KAMFERFTEKAIKVIMLAQEEARRLGHNFV                AAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGS             VAARVLENLGADPSNIRTQVIRM                   KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNN
Sbjct:   86 FVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESNEAVGASVGGGTSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNN 295          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.045e-77
Identity = 161/209 (77.03%), Postives = 161/209 (77.03%), Query Frame = 1
Query:   73 VVKAMFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            VVKAMFERFTEKAIKVIMLAQEEARRLGHNFV                AAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGS             VAARVLENLGADPSNIRTQVIRM                  NKMPTLEEYGTNLTKLAEEGKLDPVVGR PQIERVVQILGRRTKNN
Sbjct:   37 VVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRM-VGENNEVTANVGGGSGTNKMPTLEEYGTNLTKLAEEGKLDPVVGRHPQIERVVQILGRRTKNN 244          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.157e-76
Identity = 161/232 (69.40%), Postives = 165/232 (71.12%), Query Frame = 1
Query:    4 DFHSTVAVXXXXXXXXXXXXXXFVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            DFHS V+               F+ +AMFERFTEKAIKVIMLAQEEARRLGHNFV                AAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELS EEARQLGHNYIGS             VAARVLENLGADP+NIRTQVIRM                  NK PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNN
Sbjct:   67 DFHSKVS---KAVSSRRARAKRFIPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSQEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSNNKTPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNN 295          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.366e-76
Identity = 157/210 (74.76%), Postives = 159/210 (75.71%), Query Frame = 1
Query:   70 FVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            FV KAMFERFTEKAIKVIMLAQEEARRLGHNFV                AAKVLKSMGINLKDARVEVEKIIGRGSGF+AVEIPFTPRAKRVLELSLEEARQLGHNYIGS             VAARVLENLGADP+NIRTQVIRM                   KMPTLEEYGTNLTKLAEEGKLDPVVGRQ QIERV QILGRRTKNN
Sbjct:   88 FVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFIAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESSEAVGASVGGGTSGLKMPTLEEYGTNLTKLAEEGKLDPVVGRQAQIERVTQILGRRTKNN 297          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.188e-66
Identity = 138/205 (67.32%), Postives = 149/205 (72.68%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            MFERFTEKAIKVIMLAQEEARRLGHNFV                AAKVLKSMG+NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+             VAARVLENL  D + +RTQVIR+                   K PTLEE+G+NLT+ A EGKLDPV+GRQ +IERV+QILGRRTKNN
Sbjct:    1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLALDLTKVRTQVIRL---LGDTAEVSATNGQTKGKTPTLEEFGSNLTQKAAEGKLDPVIGRQKEIERVIQILGRRTKNN 202          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.047e-65
Identity = 136/205 (66.34%), Postives = 149/205 (72.68%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            MFERFTEKAIKVIMLAQEEARRLGHNFV                AA+VLKSM +NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+             VAARVLENL  D S+IR +VI+M                  +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNN
Sbjct:    1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLMGLVREGEGVAARVLENLAVDVSSIRAEVIQMLGENAEANVSGSNTTQARSKTPTLEEFGSNLTQMAMEGGLDPVVGRQKEIERVIQILGRRTKNN 205          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.673e-65
Identity = 136/205 (66.34%), Postives = 149/205 (72.68%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            MFERFTEKAIKVIMLAQEEARRLGHNFV                AA+VLKSM +NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+             VAARVLENL  D S+IR +VI+M                  +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNN
Sbjct:    1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLMGLVREGEGVAARVLENLAVDVSSIRAEVIQMLGENAEANVSGSNATQARSKTPTLEEFGSNLTQMAIEGGLDPVVGRQKEIERVIQILGRRTKNN 205          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.051e-61
Identity = 128/207 (61.84%), Postives = 147/207 (71.01%), Query Frame = 1
Query:   79 KAMFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            K MFERFTEKA+KVIMLAQEEARRLGHNFV                AAK LKSMGI LKDAR+EVEKIIGRGSGFVA+EIPFTPRAK++LEL++EE+R L HNY+G+             VAARVLENLG D   +R+ +IRM                  +K+PTLEE+GTNLT++A EGKLDPVVGR  +IERVVQILGRRTKNN
Sbjct:   30 KNMFERFTEKAVKVIMLAQEEARRLGHNFVGTEQILLGILGEGTGLAAKALKSMGITLKDARIEVEKIIGRGSGFVAIEIPFTPRAKKILELAIEESRILTHNYVGTEHLLLGLIKEGEGVAARVLENLGVDLPKLRSNIIRM---IGETSEVSVGATSGRSKVPTLEEFGTNLTQMAVEGKLDPVVGRAKEIERVVQILGRRTKNN 233          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.252e-42
Identity = 96/211 (45.50%), Postives = 129/211 (61.14%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPT------LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            MFERFT++A +V++LAQEEAR L HN++                AAK L+S+GI+L+  R +VE+IIG+G    +  IPFTPRAK+VLELSL EA QLGHNYIG+             VAA+VL  LGA+ + +R QVI++                   +  +      L+++G NLT  A EGKLDPV+GR+ +IERV+Q+L RRTKNN
Sbjct:    1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPSTSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNN 211          
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.252e-42
Identity = 96/211 (45.50%), Postives = 129/211 (61.14%), Query Frame = 1
Query:   85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPT------LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699
            MFERFT++A +V++LAQEEAR L HN++                AAK L+S+GI+L+  R +VE+IIG+G    +  IPFTPRAK+VLELSL EA QLGHNYIG+             VAA+VL  LGA+ + +R QVI++                   +  +      L+++G NLT  A EGKLDPV+GR+ +IERV+Q+L RRTKNN
Sbjct:    1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPSTSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNN 211          
The following BLAST results are available for this feature:
BLAST of CF417744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
CLPAB_SOLLC6.135e-7876.19ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA3.045e-7777.03ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PEA1.157e-7669.40ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC3.366e-7674.76ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH9.188e-6667.32ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE2.047e-6566.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU2.673e-6566.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA1.051e-6161.84ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_MYCTU9.252e-4245.50Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCBO9.252e-4245.50Probable ATP-dependent Clp protease ATP-binding su... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-674 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417744 ID=CF417744; Name=CF417744; organism=Citrus sinensis; type=EST; length=699bp
TGTGATTTCCATTCCACGGTGGCTGTTTCACTCTCTTCTAGACGAGGAAA
GTCTGGAAGAGCTGGTGGATTTGTTGTTAAAGCCATGTTTGAGCGCTTCA
CAGAGAAAGCAATTAAAGTGATTATGCTTGCCCAAGAGGAAGCAAGACGG
CTTGGCCACAATTTTGTTGGCACGGAGCAAATTCTATTGGGTCTTATTGG
TGAAGGCACTGGCATTGCTGCTAAGGTTCTTAAATCAATGGGAATCAATC
TTAAAGATGCACGTGTAGAAGTGGAGAAGATAATTGGAAGGGGAAGTGGT
TTTGTTGCTGTGGAAATTCCGTTCACTCCTCGTGCAAAGCGTGTCTTGGA
GCTTTCTCTGGAGGAAGCCCGCCAGCTGGGCCATAATTATATTGGGTCCG
AGCATCTTCTCCTTGGGCTTCTTCGTGAAGGGGAAGGTGTAGCAGCCCGT
GTTCTTGAGAATTTAGGTGCTGACCCTAGTAACATCCGCACACAGGTTAT
TCGTATGGTTGGTGAGAGCACAGAAGCTGTTGGCGCTGGTGTTGGAGGAG
GAAGCAGTGGCAACAAGATGCCAACACTGGAGGAGTATGGAACAAATTTG
ACTAAGCTAGCAGAGGAGGGAAAATTGGATCCTGTTGTTGGGAGACAGCC
ACAAATAGAGCGTGTTGTCCAAATTTTGGGCCGTCGAACTAAGAATAAT
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