CF417744
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1) HSP 1 Score: 290.426 bits (742), Expect = 6.135e-78 Identity = 160/210 (76.19%), Postives = 160/210 (76.19%), Query Frame = 1 Query: 70 FVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 FV KAMFERFTEKAIKVIMLAQEEARRLGHNFV AAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGS VAARVLENLGADPSNIRTQVIRM KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNN Sbjct: 86 FVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESNEAVGASVGGGTSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNN 295
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1) HSP 1 Score: 288.115 bits (736), Expect = 3.045e-77 Identity = 161/209 (77.03%), Postives = 161/209 (77.03%), Query Frame = 1 Query: 73 VVKAMFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 VVKAMFERFTEKAIKVIMLAQEEARRLGHNFV AAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGS VAARVLENLGADPSNIRTQVIRM NKMPTLEEYGTNLTKLAEEGKLDPVVGR PQIERVVQILGRRTKNN Sbjct: 37 VVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRM-VGENNEVTANVGGGSGTNKMPTLEEYGTNLTKLAEEGKLDPVVGRHPQIERVVQILGRRTKNN 244
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 286.189 bits (731), Expect = 1.157e-76 Identity = 161/232 (69.40%), Postives = 165/232 (71.12%), Query Frame = 1 Query: 4 DFHSTVAVXXXXXXXXXXXXXXFVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 DFHS V+ F+ +AMFERFTEKAIKVIMLAQEEARRLGHNFV AAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELS EEARQLGHNYIGS VAARVLENLGADP+NIRTQVIRM NK PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNN Sbjct: 67 DFHSKVS---KAVSSRRARAKRFIPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSQEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSNNKTPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNN 295
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 3.366e-76 Identity = 157/210 (74.76%), Postives = 159/210 (75.71%), Query Frame = 1 Query: 70 FVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 FV KAMFERFTEKAIKVIMLAQEEARRLGHNFV AAKVLKSMGINLKDARVEVEKIIGRGSGF+AVEIPFTPRAKRVLELSLEEARQLGHNYIGS VAARVLENLGADP+NIRTQVIRM KMPTLEEYGTNLTKLAEEGKLDPVVGRQ QIERV QILGRRTKNN Sbjct: 88 FVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFIAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESSEAVGASVGGGTSGLKMPTLEEYGTNLTKLAEEGKLDPVVGRQAQIERVTQILGRRTKNN 297
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 9.188e-66 Identity = 138/205 (67.32%), Postives = 149/205 (72.68%), Query Frame = 1 Query: 85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 MFERFTEKAIKVIMLAQEEARRLGHNFV AAKVLKSMG+NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+ VAARVLENL D + +RTQVIR+ K PTLEE+G+NLT+ A EGKLDPV+GRQ +IERV+QILGRRTKNN Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLALDLTKVRTQVIRL---LGDTAEVSATNGQTKGKTPTLEEFGSNLTQKAAEGKLDPVIGRQKEIERVIQILGRRTKNN 202
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1) HSP 1 Score: 248.825 bits (634), Expect = 2.047e-65 Identity = 136/205 (66.34%), Postives = 149/205 (72.68%), Query Frame = 1 Query: 85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 MFERFTEKAIKVIMLAQEEARRLGHNFV AA+VLKSM +NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+ VAARVLENL D S+IR +VI+M +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNN Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLMGLVREGEGVAARVLENLAVDVSSIRAEVIQMLGENAEANVSGSNTTQARSKTPTLEEFGSNLTQMAMEGGLDPVVGRQKEIERVIQILGRRTKNN 205
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 2.673e-65 Identity = 136/205 (66.34%), Postives = 149/205 (72.68%), Query Frame = 1 Query: 85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 MFERFTEKAIKVIMLAQEEARRLGHNFV AA+VLKSM +NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+ VAARVLENL D S+IR +VI+M +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNN Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLMGLVREGEGVAARVLENLAVDVSSIRAEVIQMLGENAEANVSGSNATQARSKTPTLEEFGSNLTQMAIEGGLDPVVGRQKEIERVIQILGRRTKNN 205
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 1.051e-61 Identity = 128/207 (61.84%), Postives = 147/207 (71.01%), Query Frame = 1 Query: 79 KAMFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 K MFERFTEKA+KVIMLAQEEARRLGHNFV AAK LKSMGI LKDAR+EVEKIIGRGSGFVA+EIPFTPRAK++LEL++EE+R L HNY+G+ VAARVLENLG D +R+ +IRM +K+PTLEE+GTNLT++A EGKLDPVVGR +IERVVQILGRRTKNN Sbjct: 30 KNMFERFTEKAVKVIMLAQEEARRLGHNFVGTEQILLGILGEGTGLAAKALKSMGITLKDARIEVEKIIGRGSGFVAIEIPFTPRAKKILELAIEESRILTHNYVGTEHLLLGLIKEGEGVAARVLENLGVDLPKLRSNIIRM---IGETSEVSVGATSGRSKVPTLEEFGTNLTQMAVEGKLDPVVGRAKEIERVVQILGRRTKNN 233
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 9.252e-42 Identity = 96/211 (45.50%), Postives = 129/211 (61.14%), Query Frame = 1 Query: 85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPT------LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 MFERFT++A +V++LAQEEAR L HN++ AAK L+S+GI+L+ R +VE+IIG+G + IPFTPRAK+VLELSL EA QLGHNYIG+ VAA+VL LGA+ + +R QVI++ + + L+++G NLT A EGKLDPV+GR+ +IERV+Q+L RRTKNN Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPSTSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNN 211
BLAST of CF417744 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 9.252e-42 Identity = 96/211 (45.50%), Postives = 129/211 (61.14%), Query Frame = 1 Query: 85 MFERFTEKAIKVIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPT------LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNN 699 MFERFT++A +V++LAQEEAR L HN++ AAK L+S+GI+L+ R +VE+IIG+G + IPFTPRAK+VLELSL EA QLGHNYIG+ VAA+VL LGA+ + +R QVI++ + + L+++G NLT A EGKLDPV+GR+ +IERV+Q+L RRTKNN Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPSTSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNN 211 The following BLAST results are available for this feature:
BLAST of CF417744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 37
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417744 ID=CF417744; Name=CF417744; organism=Citrus sinensis; type=EST; length=699bpback to top |