CF417757

Overview
NameCF417757
Unique NameCF417757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:140..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417757 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 442.195 bits (1136), Expect = 1.240e-123
Identity = 212/233 (90.99%), Postives = 222/233 (95.28%), Query Frame = 1
Query:    1 LAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRXAMFSMFGFFVQAIVTGKGPLENLADHLADPV 693
            L+PS +E++  GR++MRKT +K+   SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR AMFSMFGFFVQAIVTGKGPLENLADHLADPV
Sbjct:   20 LSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 252          
BLAST of CF417757 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 442.195 bits (1136), Expect = 1.240e-123
Identity = 210/231 (90.91%), Postives = 220/231 (95.24%), Query Frame = 1
Query:    1 LAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRXAMFSMFGFFVQAIVTGKGPLENLADHLADPV 693
            L+P+  E+    + +MRKT SKSVSSGSPWYG DRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGR AMFSMFGFFVQAIVTGKGPLENLADHLADPV
Sbjct:   10 LSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 240          
BLAST of CF417757 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 441.81 bits (1135), Expect = 1.620e-123
Identity = 211/233 (90.56%), Postives = 223/233 (95.71%), Query Frame = 1
Query:    1 LAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRXAMFSMFGFFVQAIVTGKGPLENLADHLADPV 693
            L+PS +E++  G+++MRKT SK+  VSSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGR AMFSMFGFFVQAIVTGKGPLENLADHLADPV
Sbjct:   20 LSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 252          
BLAST of CF417757 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 441.425 bits (1134), Expect = 2.116e-123
Identity = 211/233 (90.56%), Postives = 223/233 (95.71%), Query Frame = 1
Query:    1 LAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRXAMFSMFGFFVQAIVTGKGPLENLADHLADPV 693
            L+PS +E++  G+++MRKT SK+  VSSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGR AMFSMFGFFVQAIVTGKGPLENLADHLADPV
Sbjct:   19 LSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 251          
BLAST of CF417757 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 441.039 bits (1133), Expect = 2.763e-123
Identity = 211/231 (91.34%), Postives = 219/231 (94.81%), Query Frame = 1
Query:    1 LAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRXAMFSMFGFFVQAIVTGKGPLENLADHLADPV 693
            L+PS +E+S  GRI+MRK  +KS  S SPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGR AMFSMFGFFVQAIVTGKGPLENLADHLADPV
Sbjct:   20 LSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250          
BLAST of CF417757 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 441.039 bits (1133), Expect = 2.763e-123
Identity = 209/231 (90.48%), Postives = 220/231 (95.24%), Query Frame = 1
Query:    1 LAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRXAMFSMFGFFVQAIVTGKGPLENLADHLADPV 693
            L+PS  E++  GR+SMRKT +K V+S SPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGR AMFSMFGFFVQAIVTGKGPLENLADHLADPV
Sbjct:   20 LSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250          
BLAST of CF417757 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 437.187 bits (1123), Expect = 3.990e-122
Identity = 209/233 (89.70%), Postives = 221/233 (94.85%), Query Frame = 1
Query:    1 LAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRXAMFSMFGFFVQAIVTGKGPLENLADHLADPV 693
            L+PS +E++  G+  MRKT +K+  VSSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGA+EGYR+AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR AMFSMFGFFVQAIVTGKGPL+NL DHLADPV
Sbjct:   20 LSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPV 252          
BLAST of CF417757 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 436.417 bits (1121), Expect = 6.807e-122
Identity = 208/233 (89.27%), Postives = 222/233 (95.28%), Query Frame = 1
Query:    1 LAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRXAMFSMFGFFVQAIVTGKGPLENLADHLADPV 693
            L+PS +E++  G+++MRKT +K+  +SSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVK IKNGR AMFSMFGFFVQAIVTGKGPLENLADHLADPV
Sbjct:   20 LSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 252          
BLAST of CF417757 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 436.417 bits (1121), Expect = 6.807e-122
Identity = 208/233 (89.27%), Postives = 222/233 (95.28%), Query Frame = 1
Query:    1 LAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRXAMFSMFGFFVQAIVTGKGPLENLADHLADPV 693
            L+PS +E++  G+++MRKT +K+  VSSGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AG PLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGR AMFSMFGFFVQA+VTGKGPLENLADHLADPV
Sbjct:   19 LSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPV 251          
BLAST of CF417757 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 436.032 bits (1120), Expect = 8.890e-122
Identity = 210/233 (90.13%), Postives = 218/233 (93.56%), Query Frame = 1
Query:    1 LAPSGNELSNGGRISMRKTGSK--SVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRXAMFSMFGFFVQAIVTGKGPLENLADHLADPV 693
            L P+ +E+   GRI+MRKT  K  +V S SPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGR AMFSMFGFFVQAIVTGKGPLENLADHLADPV
Sbjct:   20 LGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 252          
The following BLAST results are available for this feature:
BLAST of CF417757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CB2G_SOLLC1.240e-12390.99Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB21_CUCSA1.240e-12390.91Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_TOBAC1.620e-12390.56Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC2.116e-12390.56Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2B_SOLLC2.763e-12391.34Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB22_TOBAC2.763e-12390.48Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB27_TOBAC3.990e-12289.70Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC6.807e-12289.27Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_NICPL6.807e-12289.27Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB2A_SPIOL8.890e-12290.13Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-687 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417757 ID=CF417757; Name=CF417757; organism=Citrus sinensis; type=EST; length=693bp
CTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTGGCCGCATCTCCATGCG
TAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCTAG
ACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTTG
ACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAGC
TGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCA
GATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCC
CGCAACGGAGTCAAGTTCGGTGAGGCCGTATGGTTCAAGGCGGGGGCCCA
GATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCC
ACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGA
GCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGA
CCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACC
CGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGNTG
GCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAA
GGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGACCCTGTC
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