CF417762

Overview
NameCF417762
Unique NameCF417762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5958 contig Csv1_Contig5958:93..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF417762 vs. ExPASy Swiss-Prot
Match: TXD17_DANRE (Thioredoxin domain-containing protein 17 OS=Danio rerio GN=txndc17 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.778e-12
Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = 3 
Query:  108 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVDSRFKLTGVPTLFRW 347
            K K  F  F  DKD     SWCPDCV+AEPV+   L   P+    +   VGDRP W++  + F+     KLTGVPTL R+
Sbjct:   23 KGKEIFAYFSGDKDEHGK-SWCPDCVKAEPVVRAELPHLPEGTVFIYCQVGDRPYWKDSNNDFK--KTLKLTGVPTLLRY 99
[Close]
BLAST of CF417762 vs. ExPASy Swiss-Prot
Match: TXD17_MOUSE (Thioredoxin domain-containing protein 17 OS=Mus musculus GN=Txndc17 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.546e-12
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 3 
Query:   51 DATVSSFDNVFDKFKSEAPKNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVDSRFKLTGVPTLFRW 347
            + +V  F+  FDK   E  + K  F  F   KD +   SWCPDCV AEPVI + L+   +D   +   VGD+P W++P + FR   + K+T VPTL ++
Sbjct:    6 EVSVLGFEE-FDKAVKEH-EGKTIFAYFSGSKD-TEGKSWCPDCVEAEPVIREGLKHVTEDCVFIYCQVGDKPYWKDPNNDFR--QKLKITAVPTLLKY 99
The following BLAST results are available for this feature:
BLAST of CF417762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TXD17_DANRE5.778e-1245.00Thioredoxin domain-containing protein 17 OS=Danio ... [more]
TXD17_MOUSE7.546e-1239.39Thioredoxin domain-containing protein 17 OS=Mus mu... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-692 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417762 ID=CF417762; Name=CF417762; organism=Citrus sinensis; type=EST; length=605bp
AATCGAAAGGAGGCCAGGCCAGCCAAATCCAAATGCCGCTCAAGTTGTCG
GACGCAACAGTCTCAAGCTTCGACAATGTCTTCGACAAGTTTAAATCGGA
GGCGCCCAAAAATAAAGCCAATTTCATTCTTTTTCTCGCCGACAAAGATC
CCTCTACTTCTCTCAGCTGGTGCCCTGATTGCGTGAGAGCTGAACCTGTA
ATCTACAAAACCCTGGAAGCTTCACCAGATGACATCGCACTGCTGCAGGC
TTATGTTGGGGATAGACCAACATGGAGGAATCCTCAGCACCCATTCAGGG
TTGATTCAAGGTTCAAACTGACGGGAGTTCCGACACTCTTCCGCTGGGAA
AATGACACAGTCAGCGGTCGTCTTGAAGACCATGAAGCCCATCTCGAGCA
CAAAATCAAAGCCCTTCTTTCTGCCGATTAAGTTCTGATGGTTTCCCATT
TGTAGGATGCACAAGAATCCTATATGGTTGGTTTCAATCTATCTTGGCGT
TTTTGCTGGTTTTATATGCATGTTACTAATGCTGGCTANCGACGTTGCCC
TTCAGTGGCCAATGAAATAAAGTGTCTACTGATGACATTGTATTTTACAA
TTATT
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