CF417764 | Citrus Genome Database

Overview


Name	CF417764
Unique Name	CF417764
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	583

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig8146	contig	Csv1_Contig8146:580..1162.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 2.326e-108
Identity = 179/194 (92.27%), Postives = 187/194 (96.39%), Query Frame = 2

Query:    2 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 583
            AEIFSN KVS EVPWFGIEQEYTLLQQNVKWPLGWPVGA+PGPQGPYYCG GADK +GRDI+DAHYKACLYAGINISGTNGEVMPGQWE+QVGPSVGIDAGDH+WC+RYLLERITEQAGVVL+LDPKPIEGDWNGAGCHTNYSTKS REEGG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETASID F
Sbjct:  169 AEIFSNKKVSGEVPWFGIEQEYTLLQQNVKWPLGWPVGAFPGPQGPYYCGVGADKIWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIDAGDHVWCARYLLERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDQF 362

[Close]

BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 382.104 bits (980), Expect = 1.080e-105
Identity = 173/194 (89.18%), Postives = 185/194 (95.36%), Query Frame = 2

Query:    2 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 583
            AEIFSN KV+ E+PWFGIEQEYTLLQ NV WPLGWPVGAYPGPQGPYYCG GA+KS+GRDI+DAHYKACLYAGINISGTNGEVMPGQWE+QVGPSVGI+AGDH+WC+RYLLERITEQAGVVL+LDPKPIEGDWNGAGCHTNYSTKS RE+GG+E IKKAILNLSLRH EHISAYGEGNERRLTGKHETASID F
Sbjct:  167 AEIFSNKKVNEEIPWFGIEQEYTLLQPNVNWPLGWPVGAYPGPQGPYYCGVGAEKSWGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHVWCARYLLERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHMEHISAYGEGNERRLTGKHETASIDQF 360

[Close]

BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 381.719 bits (979), Expect = 1.411e-105
Identity = 175/194 (90.21%), Postives = 185/194 (95.36%), Query Frame = 2

Query:    2 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 583
            AE+FSN +V AEVPWFGIEQEYTLLQ NV WPLGWPVG YPGPQGPYYC AGADKSFGRDI+DAHYKACL+AGINISGTNGEVMPGQWEYQVGPSVGI+AGDHIW SRY+LERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKS RE+GG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETASI++F
Sbjct:  168 AEVFSNPRVIAEVPWFGIEQEYTLLQTNVNWPLGWPVGGYPGPQGPYYCSAGADKSFGRDISDAHYKACLFAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASINTF 361

[Close]

BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 380.563 bits (976), Expect = 3.144e-105
Identity = 174/194 (89.69%), Postives = 186/194 (95.88%), Query Frame = 2

Query:    2 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 583
            A+IFS++KV  EVPWFGIEQEYTL+QQ+V WPLGW VG YPGPQGPYYC AGADKSFGRDI+DAHYKACLYAGINISGTNGEVMPGQWE+QVGPSVGI+AGDHIWC+RYLLERITEQAGVVL+LDPKPI+GDWNGAGCHTNYSTKS REEGG+E IKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF
Sbjct:  171 AQIFSDAKVLGEVPWFGIEQEYTLMQQDVNWPLGWNVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHIWCARYLLERITEQAGVVLTLDPKPIDGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 364

[Close]

BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 379.022 bits (972), Expect = 9.147e-105
Identity = 173/194 (89.18%), Postives = 183/194 (94.33%), Query Frame = 2

Query:    2 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 583
            AEIFSN KV AE+PW+GIEQEYTLLQ NVKWPLGWPVG YPGPQGPYYC AGADKSFGRDI+DAHYKAC+YAGINISGTNGEVMPGQWEYQVGPSVGI+AGDHIW SRY+LERITEQAGVVL+LDPKPIEGDWNGAGCHTNYSTKS RE+GG+E IKKAILNLSLRHK HI AYGEGNERRLTGKHETASI+ F
Sbjct:  169 AEIFSNPKVEAEIPWYGIEQEYTLLQTNVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACIYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKIHIEAYGEGNERRLTGKHETASINDF 362

[Close]

BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 1.195e-104
Identity = 173/194 (89.18%), Postives = 184/194 (94.85%), Query Frame = 2

Query:    2 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 583
            AEIFSN KV AE+PW+GIEQEYTLLQ +VKWPLGWPVG YPGPQGPYYC AGADKSFGRDI+DAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGI+AGDHIW SRY+LERITEQAGVVL+LDPKPIEGDWNGAGCHTNYSTKS RE+GG+E IKKAILNLSLRHK HI AYGEGNERRLTGKHETASI++F
Sbjct:  167 AEIFSNPKVEAEIPWYGIEQEYTLLQTDVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKVHIEAYGEGNERRLTGKHETASINTF 360

[Close]

BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 6.135e-101
Identity = 166/194 (85.57%), Postives = 182/194 (93.81%), Query Frame = 2

Query:    2 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 583
            A++FS+ KV ++VPWFGIEQEYTLLQ++V WPLGWPVG YPGPQGPYYC  G+DKSFGRDI+DAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGI+AGDHIW SRY+LERITEQAGVVL+LDPKPI+GDWNGAGCHTNYSTKS RE+GG+E IKKAILNLSLRH  HISAYGEGNERRLTG HETASID+F
Sbjct:  167 AQVFSDPKVVSQVPWFGIEQEYTLLQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHDLHISAYGEGNERRLTGLHETASIDNF 360

[Close]

BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 3.977e-100
Identity = 165/194 (85.05%), Postives = 181/194 (93.30%), Query Frame = 2

Query:    2 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 583
            A+IFS+ KV  +VPWFGIEQEYTLLQ++V WPLGWPVG +PGPQGPYYC  GADKSFGRDI+DAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGI+AGDHIW SRY+LERITEQAGVVL+LDPKPI+GDWNGAGCHTNYSTK+ RE+GG+E IK+AILNLSLRH  HISAYGEGNERRLTGKHETASI +F
Sbjct:  162 AQIFSDPKVGEQVPWFGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCAVGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKTMREDGGFEEIKRAILNLSLRHDLHISAYGEGNERRLTGKHETASIGTF 355

[Close]

BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 358.992 bits (920), Expect = 9.795e-99
Identity = 162/194 (83.51%), Postives = 179/194 (92.27%), Query Frame = 2

Query:    2 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 583
            A+IFS+ KV+++VPWFGIEQEYTL+Q++V WPLGWPVG YPGPQGPYYC  G+DKSFGRDI+DAHYKACLYAGI ISGTNGEVMPGQWEYQVGPSVGIDAGDHIW SRY+LERITEQAGVVL+LDPKPI+GDWNGAGCHTNYST S RE+GG++ IKKAILNLSLRH  HI+AYGEGNERRLTG HETASI  F
Sbjct:  173 AQIFSDPKVTSQVPWFGIEQEYTLMQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGIEISGTNGEVMPGQWEYQVGPSVGIDAGDHIWASRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTLSMREDGGFDVIKKAILNLSLRHDLHIAAYGEGNERRLTGLHETASISDF 366

[Close]

BLAST of CF417764 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 2.949e-95
Identity = 158/194 (81.44%), Postives = 175/194 (90.21%), Query Frame = 2

Query:    2 AEIFSNSKVSAEVPWFGIEQEYTLLQQNVKWPLGWPVGAYPGPQGPYYCGAGADKSFGRDIADAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIDAGDHIWCSRYLLERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSTREEGGYETIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSF 583
            A+IFS+ +V AEVPW+GIEQEYTLLQ++VKWPLGWPVG YPGPQGPYYCG GADK++GRDI DAHYKACLYAGINISG NGEVMPGQWE+QVGPSVGI AGD +W +RY+LERITE AGVVLSLDPKPI+GDWNGAG HTNYSTKS R  GGYE IKKAI  L LRHKEHI+AYGEGNERRLTG+HETA I++F
Sbjct:  111 AKIFSHPEVVAEVPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGIGADKAWGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWAARYILERITEIAGVVLSLDPKPIQGDWNGAGAHTNYSTKSMRNNGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTF 304

The following BLAST results are available for this feature:

BLAST of CF417764 vs. ExPASy Swiss-Prot

BLAST of CF417764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88


Match Name	E-value	Identity	Description
GLNA2_ARATH	2.326e-108	92.27	Glutamine synthetase, chloroplastic/mitochondrial ...	[more]
GLNAC_BRANA	1.080e-105	89.18	Glutamine synthetase, chloroplastic OS=Brassica na...	[more]
GLNA4_PHAVU	1.411e-105	90.21	Glutamine synthetase leaf isozyme, chloroplastic O...	[more]
GLNA2_DAUCA	3.144e-105	89.69	Glutamine synthetase, chloroplastic OS=Daucus caro...	[more]
GLNA2_PEA	9.147e-105	89.18	Glutamine synthetase leaf isozyme, chloroplastic O...	[more]
GLNA2_MEDSA	1.195e-104	89.18	Glutamine synthetase leaf isozyme, chloroplastic O...	[more]
GLNA2_ORYSJ	6.135e-101	85.57	Glutamine synthetase, chloroplastic OS=Oryza sativ...	[more]
GLNAC_MAIZE	3.977e-100	85.05	Glutamine synthetase, chloroplastic OS=Zea mays GN...	[more]
GLNA2_HORVU	9.795e-99	83.51	Glutamine synthetase leaf isozyme, chloroplastic O...	[more]
GLNA1_ALNGL	2.949e-95	81.44	Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-694 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_H08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417764 ID=CF417764; Name=CF417764; organism=Citrus sinensis; type=EST; length=583bp
TGCTGAAATTTTCAGTAACTCGAAAGTGTCTGCTGAAGTTCCATGGTTTG
GGATAGAGCAAGAGTACACCTTACTTCAACAAAATGTGAAATGGCCTCTG
GGTTGGCCTGTTGGAGCCTATCCTGGTCCCCAGGGTCCTTATTACTGTGG
AGCTGGGGCTGATAAGTCGTTTGGCCGTGACATTGCAGATGCTCATTACA
AGGCTTGCTTGTATGCTGGCATTAACATTAGTGGCACCAACGGGGAGGTT
ATGCCTGGCCAGTGGGAATATCAAGTTGGTCCCAGTGTAGGCATTGATGC
TGGAGATCATATATGGTGTTCGAGATACCTTCTTGAGAGAATCACTGAAC
AAGCTGGTGTTGTTCTCTCACTTGATCCAAAACCAATTGAGGGAGACTGG
AATGGTGCTGGATGCCACACCAATTACAGTACAAAGAGTACGAGAGAGGA
AGGAGGCTATGAAACTATTAAGAAGGCAATCTTGAATCTGTCCCTTCGCC
ATAAAGAACACATCAGTGCTTATGGTGAAGGAAATGAGAGAAGGCTAACA
GGAAAGCATGAAACAGCTAGCATTGACTCATTT