CF417775

Overview
NameCF417775
Unique NameCF417775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12749 contig Csv1_Contig12749:730..1427. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_ORYSJ (Preprotein translocase subunit secY, chloroplastic OS=Oryza sativa subsp. japonica GN=SECY PE=2 SV=1)

HSP 1 Score: 389.423 bits (999), Expect = 9.623e-108
Identity = 195/232 (84.05%), Postives = 211/232 (90.95%), Query Frame = 3
Query:    3 KREGEAGRKKVLQYTRYASVGFAIVQXIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            K+EGEAGRKKVLQYTRYASVGFAIVQ IGQVL+LRPYVNDF              GS FTT+IGERISDLKLGNGTSLLIFTSIISYLPASFGRTVA+AFQDGNY+GL TII+SF+ LVLGIVYVQEAERKIP+NYASRY+SRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTG+  LKKAA++LNPGG+ Y+PTN+LLIAFFNYYYTFLQLDPDD+SEQLKR
Sbjct:  229 KKEGEAGRKKVLQYTRYASVGFAIVQAIGQVLFLRPYVNDFSTEWVLTSVTLLTLGSVFTTFIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAQAFQDGNYVGLLTIILSFLFLVLGIVYVQEAERKIPLNYASRYSSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLEFLKKAAISLNPGGALYIPTNVLLIAFFNYYYTFLQLDPDDLSEQLKR 460          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_MAIZE (Preprotein translocase subunit secY, chloroplastic OS=Zea mays GN=SECY PE=2 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 4.776e-107
Identity = 195/232 (84.05%), Postives = 211/232 (90.95%), Query Frame = 3
Query:    3 KREGEAGRKKVLQYTRYASVGFAIVQXIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            ++EGEAGRKKVLQYTRYASVGFAIVQ IGQVLYLRPYVNDF              GS FTT+IGERISDLKLGNGTSLLIFTSIISYLPASFGRTVA+AFQDGNY+GL TII+SF+LLVLGIVYVQEAERKIP+NYASRY+SR+G LQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARF+G+  LKKAA+ALNPGG+ YLPTN+LLIAFFNYYYTFLQLDPDD+SEQLKR
Sbjct:  226 RKEGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWVLTSVTLLTLGSVFTTFIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAQAFQDGNYVGLLTIILSFLLLVLGIVYVQEAERKIPLNYASRYSSRTGELQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFSGLDFLKKAAIALNPGGALYLPTNVLLIAFFNYYYTFLQLDPDDLSEQLKR 457          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_ARATH (Preprotein translocase subunit secY, chloroplastic OS=Arabidopsis thaliana GN=SECY PE=1 SV=2)

HSP 1 Score: 382.489 bits (981), Expect = 1.176e-105
Identity = 193/232 (83.19%), Postives = 205/232 (88.36%), Query Frame = 3
Query:    3 KREGEAGRKKVLQYTRYASVGFAIVQXIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            K+EGEAGRKK+LQYTRYASVGFAIVQ IGQV YLRPYVNDF              GS  TTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRT AEA Q+GNY GL TI++SF+LLVLGIVYVQEAERKIP+NYASRYTS++GGLQ+SAYLPFKVNS+GVMPIIFSTSSLALP TLARFTGI+ALK  A AL PGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR
Sbjct:  224 KKEGEAGRKKILQYTRYASVGFAIVQAIGQVFYLRPYVNDFSTEWVVSSVTLLTLGSVLTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTTAEALQEGNYTGLGTIVVSFLLLVLGIVYVQEAERKIPLNYASRYTSKAGGLQKSAYLPFKVNSAGVMPIIFSTSSLALPATLARFTGISALKNVAFALTPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 455          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_PEA (Preprotein translocase subunit secY, chloroplastic OS=Pisum sativum GN=SECY PE=2 SV=1)

HSP 1 Score: 377.867 bits (969), Expect = 2.897e-104
Identity = 189/232 (81.47%), Postives = 208/232 (89.66%), Query Frame = 3
Query:    3 KREGEAGRKKVLQYTRYASVGFAIVQXIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            K+EGEAGRKK+LQYTRYASVGFAIVQ IGQVL+LRPY NDF              GS FTTYIGE+I++LKLGNGTSLLIFT+IISYLPASFGRT ++AF D NY+GL TII+SF LLVLGIVYVQEAERKIPINYASR+TS+SGG+++SAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTG+++LK AAVALNPGGSFYLP NILLIAFFNYYYTFLQLDPDDVSEQLKR
Sbjct:  202 KKEGEAGRKKLLQYTRYASVGFAIVQAIGQVLFLRPYANDFTTEWALTSVILLTLGSVFTTYIGEQITELKLGNGTSLLIFTNIISYLPASFGRTFSQAFSDANYVGLVTIIVSFFLLVLGIVYVQEAERKIPINYASRFTSKSGGIEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLSSLKTAAVALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDVSEQLKR 433          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_SPIOL (Preprotein translocase subunit secY, chloroplastic OS=Spinacia oleracea GN=SECY PE=2 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 5.464e-103
Identity = 186/232 (80.17%), Postives = 206/232 (88.79%), Query Frame = 3
Query:    3 KREGEAGRKKVLQYTRYASVGFAIVQXIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            K+EGEAGRKK+ QYT+YASVGFA+VQ IGQVL+LRPYVND+              GS FTTY+GERISDLKLGNGTSLLIFT+IISYLPASFGRTVAEA+Q+GNY GLA I++SF+ LV GIVYVQEAERKIP+NYASRY+ +SGGLQ+SAYLPFKVNS+GVMPIIFSTSSL+LP TLARFTG+  LKKAAVAL PGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR
Sbjct:  221 KKEGEAGRKKIKQYTQYASVGFALVQAIGQVLFLRPYVNDYSTEWVLSSVILLTLGSVFTTYLGERISDLKLGNGTSLLIFTNIISYLPASFGRTVAEAYQEGNYTGLAIIVVSFVSLVFGIVYVQEAERKIPMNYASRYSGKSGGLQKSAYLPFKVNSAGVMPIIFSTSSLSLPATLARFTGLDILKKAAVALTPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 452          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_SYNY3 (Preprotein translocase subunit secY OS=Synechocystis sp. (strain PCC 6803) GN=secY PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.260e-40
Identity = 93/243 (38.27%), Postives = 144/243 (59.26%), Query Frame = 3
Query:    3 KREGEAGRKKVLQYTRYASVGFAIVQXIGQVL-YLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIIS--FILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFT----GIAALKKAAV----ALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            K EGEAGR+K+ QY+RY + G+ I+Q +G  +  LRPY N++              GS F  +I E I++  +GNG SLLIF +I++ LP + G+T+  A   G     A +++   F+++++GIV+VQE  R+IPI  A R   +    +R++YLP ++N  GVMPIIF+++ L LP +LA F     G+    +  V    AL PG   Y     ++I FF+Y+Y  L ++P+DVS+ LK+
Sbjct:  110 KNEGEAGRRKISQYSRYIAFGWCIIQGLGLTVGLLRPYANNYGPLFIFQTVLAITAGSMFVMWISELITERGIGNGASLLIFVNIVATLPQTLGQTIEYAQSGGRQSITAVVLLMLVFLVMIVGIVFVQEGTRRIPIISARRQVGKKLYRERTSYLPLRLNQGGVMPIIFASAVLILPSSLAGFATGNEGLGGFGEIFVQISNALRPGTWVYTVVYSVMIFFFSYFYASLIVNPEDVSKNLKK 352          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_PORPU (Preprotein translocase subunit secY OS=Porphyra purpurea GN=secY PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.989e-37
Identity = 82/232 (35.34%), Postives = 136/232 (58.62%), Query Frame = 3
Query:    3 KREGEAGRKKVLQYTRYASVGFAIVQXIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            K EGE GR+K+ Q TRY ++G+A +Q     ++++PYV ++              GS    ++ E I++  +GNG SLLIF +I+S LP +F ++  +A      I     I+ F+L+++  ++VQE  R+I I  ++R   +S  L  ++YLP K+N  GVMPI+F+++S+ALP  L + T    L +      P GS YL    +LI FF+Y+YT + ++P+D++  LK+
Sbjct:   93 KEEGELGRQKITQITRYLALGWATLQSGAISIWVKPYVFNWNFTFVCESVLALTAGSMIIMWLSELITEKGIGNGASLLIFQNIVSGLPKNFTQSFFDANYSNTSIKFGLFIVIFLLMIIITIFVQEGTRRIKI-ISARQLGKSSILDPNSYLPLKLNQGGVMPIVFASASMALPAYLTQLTQNTFLLQVLYLFCPNGSLYLVLYSVLILFFSYFYTSIVMNPEDIATNLKK 323          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_SYNP6 (Preprotein translocase subunit secY OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secY PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.516e-36
Identity = 90/238 (37.82%), Postives = 139/238 (58.40%), Query Frame = 3
Query:    3 KREGEAGRKKVLQYTRYASVGFAIVQXIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYI---GLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGS---FYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            K EGEAGR+K+ Q TRY S+G+A++Q I   +++  Y                  GS F  +I E I++  +GNG SLLIF +I++ LP S  +T+ E  Q G+     G+  ++I F+  ++GIV+VQE  R+IP+  A R        +RS+YLP ++N  GVMPIIF+++ L LP +LA FT    + + A  L+P G     Y    ++LI  F+Y+Y+ L L+P D+++ LK+
Sbjct:  114 KNEGEAGRRKIAQLTRYVSLGWALLQSIVIAVWVTRYAVTPGPLFTIQTALALVAGSMFVMWISELITERGIGNGASLLIFLNIVATLPRSLQQTL-ELAQSGDRSTVGGIVILLIVFLATIVGIVFVQEGTRRIPVVSARRQVGNRVYSERSSYLPLRLNQGGVMPIIFASAILVLPFSLANFTSNEVVLRIANYLSPNGPTPWIYALFYLVLIVAFSYFYSSLILNPVDLAQNLKK 350          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_SYNE7 (Preprotein translocase subunit secY OS=Synechococcus elongatus (strain PCC 7942) GN=secY PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.516e-36
Identity = 90/238 (37.82%), Postives = 139/238 (58.40%), Query Frame = 3
Query:    3 KREGEAGRKKVLQYTRYASVGFAIVQXIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYI---GLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGS---FYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            K EGEAGR+K+ Q TRY S+G+A++Q I   +++  Y                  GS F  +I E I++  +GNG SLLIF +I++ LP S  +T+ E  Q G+     G+  ++I F+  ++GIV+VQE  R+IP+  A R        +RS+YLP ++N  GVMPIIF+++ L LP +LA FT    + + A  L+P G     Y    ++LI  F+Y+Y+ L L+P D+++ LK+
Sbjct:  114 KNEGEAGRRKIAQLTRYVSLGWALLQSIVIAVWVTRYAVTPGPLFTIQTALALVAGSMFVMWISELITERGIGNGASLLIFLNIVATLPRSLQQTL-ELAQSGDRSTVGGIVILLIVFLATIVGIVFVQEGTRRIPVVSARRQVGNRVYSERSSYLPLRLNQGGVMPIIFASAILVLPFSLANFTSNEVVLRIANYLSPNGPTPWIYALFYLVLIVAFSYFYSSLILNPVDLAQNLKK 350          
BLAST of CF417775 vs. ExPASy Swiss-Prot
Match: SECY_PORYE (Preprotein translocase subunit secY OS=Porphyra yezoensis GN=secY PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.419e-34
Identity = 80/232 (34.48%), Postives = 132/232 (56.90%), Query Frame = 3
Query:    3 KREGEAGRKKVLQYTRYASVGFAIVQXIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAEAFQDGNYIGLATIIISFILLVLGIVYVQEAERKIPINYASRYTSRSGGLQRSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGIAALKKAAVALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKR 698
            K EGE GR+K+ Q TRY ++G+A +Q     ++++PYV ++              GS    ++ E I++  +GNG SLLIF +I+S LP +F ++  +A      +     I  F+L+++  + VQE  R+I I  ++R   +S  L  ++YLP K+N  GVMPI+F+++S+ALP  L +      L +      P GS YL     LI FF+Y+YT + ++P+D++  LK+
Sbjct:   93 KEEGELGRQKITQITRYLALGWATLQSGAISIWVKPYVFNWNFAFVCESVLALTAGSMIIMWLSELITEKGIGNGASLLIFQNIVSGLPKNFTQSFFDASYSNASLKFGLFIAIFLLMIIITICVQEGTRRIKI-ISARQLGKSSILDPNSYLPLKLNQGGVMPIVFASASMALPSYLTQIIQNKTLLQILYLFCPNGSLYLLLYCALILFFSYFYTSIVMNPEDIAINLKK 323          
The following BLAST results are available for this feature:
BLAST of CF417775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
SECY_ORYSJ9.623e-10884.05Preprotein translocase subunit secY, chloroplastic... [more]
SECY_MAIZE4.776e-10784.05Preprotein translocase subunit secY, chloroplastic... [more]
SECY_ARATH1.176e-10583.19Preprotein translocase subunit secY, chloroplastic... [more]
SECY_PEA2.897e-10481.47Preprotein translocase subunit secY, chloroplastic... [more]
SECY_SPIOL5.464e-10380.17Preprotein translocase subunit secY, chloroplastic... [more]
SECY_SYNY32.260e-4038.27Preprotein translocase subunit secY OS=Synechocyst... [more]
SECY_PORPU3.989e-3735.34Preprotein translocase subunit secY OS=Porphyra pu... [more]
SECY_SYNP61.516e-3637.82Preprotein translocase subunit secY OS=Synechococc... [more]
SECY_SYNE71.516e-3637.82Preprotein translocase subunit secY OS=Synechococc... [more]
SECY_PORYE1.419e-3434.48Preprotein translocase subunit secY OS=Porphyra ye... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-705 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417775 ID=CF417775; Name=CF417775; organism=Citrus sinensis; type=EST; length=698bp
AGAAAAGAGAAGGTGAAGCGGGAAGGAAGAAAGTGCTTCAGTACACCCGA
TATGCTTCGGTTGGTTTTGCAATAGTACAGGNTATTGGTCAAGTCCTTTA
TCTTCGTCCCTATGTCAATGACTTCAGTACGGAATGGGTTCTGACATCTG
TTACTTTATTGACACTTGGCTCTGCATTCACTACATACATTGGGGAAAGG
ATCTCTGATCTAAAACTTGGAAATGGCACGTCTCTTTTGATATTCACGAG
CATTATCTCCTACTTGCCAGCATCATTTGGTAGGACTGTCGCTGAGGCAT
TCCAGGATGGTAACTACATTGGGCTAGCCACCATTATTATTTCATTCATC
CTATTAGTCCTCGGCATTGTATATGTCCAGGAAGCAGAGAGAAAAATCCC
AATCAACTATGCCTCCAGATACACTAGCAGAAGCGGAGGGCTCCAAAGAT
CTGCTTACCTACCCTTTAAGGTGAATAGTTCTGGAGTGATGCCAATCATA
TTTTCCACATCATCACTGGCTCTTCCCGGTACTTTAGCACGATTCACTGG
TATAGCTGCACTTAAGAAGGCTGCAGTGGCTTTGAATCCAGGGGGTTCGT
TCTACCTTCCGACCAATATCCTCTTGATAGCTTTCTTCAACTACTACTAC
ACTTTCCTGCAATTGGATCCTGATGATGTCAGTGAACAGTTGAAGCGC
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