CF417786

Overview
NameCF417786
Unique NameCF417786
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13800 contig Csv1_Contig13800:44..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417786 vs. ExPASy Swiss-Prot
Match: RU1C_XENLA (U1 small nuclear ribonucleoprotein C OS=Xenopus laevis GN=snrp1c PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:   94 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQ 291
            MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        TAAFQQ
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQQ 59
[Close]
BLAST of CF417786 vs. ExPASy Swiss-Prot
Match: RU1C_MOUSE (U1 small nuclear ribonucleoprotein C OS=Mus musculus GN=Snrpc PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:   94 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQ 291
            MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        TAAFQQ
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQQ 59
[Close]
BLAST of CF417786 vs. ExPASy Swiss-Prot
Match: RU1C_HUMAN (U1 small nuclear ribonucleoprotein C OS=Homo sapiens GN=SNRPC PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:   94 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQ 291
            MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        TAAFQQ
Sbjct:    1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQQ 59
[Close]
BLAST of CF417786 vs. ExPASy Swiss-Prot
Match: RU1C_DICDI (U1 small nuclear ribonucleoprotein C OS=Dictyostelium discoideum GN=snrpC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:   94 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQVGAAYNQHLLAQRPRLPVLPTP 357
            MP+YYCDYCD YLTHDSPSVRK H  G +HK  V+ +YQQFE + TQSLI+ R+KE+              ++  L  +P + ++PTP
Sbjct:    1 MPKYYCDYCDKYLTHDSPSVRKSHTVGKQHKLAVQLFYQQFEAEFTQSLIEARLKEY------------EESKGRLIHQPPMGIIPTP 76
[Close]
BLAST of CF417786 vs. ExPASy Swiss-Prot
Match: RU1C_BOVIN (U1 small nuclear ribonucleoprotein C OS=Bos taurus GN=SNRPC PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:   94 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQ 291
            MP+ YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        TAAFQQ
Sbjct:    1 MPKLYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------TTAAFQQ 59
[Close]
BLAST of CF417786 vs. ExPASy Swiss-Prot
Match: RU1C_SCHPO (U1 small nuclear ribonucleoprotein C OS=Schizosaccharomyces pombe GN=usp103 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   94 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQR 252
            MPRY CDYC  +LTHDS SVRK HNAG  H  NV+ YY +  +++ Q  +++R
Sbjct:    1 MPRYLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQEEAQKQLEER 53
The following BLAST results are available for this feature:
BLAST of CF417786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RU1C_XENLA2.391e-1865.15U1 small nuclear ribonucleoprotein C OS=Xenopus la... [more]
RU1C_MOUSE2.391e-1865.15U1 small nuclear ribonucleoprotein C OS=Mus muscul... [more]
RU1C_HUMAN2.391e-1865.15U1 small nuclear ribonucleoprotein C OS=Homo sapie... [more]
RU1C_DICDI5.326e-1848.86U1 small nuclear ribonucleoprotein C OS=Dictyostel... [more]
RU1C_BOVIN6.955e-1865.15U1 small nuclear ribonucleoprotein C OS=Bos taurus... [more]
RU1C_SCHPO2.830e-1152.83U1 small nuclear ribonucleoprotein C OS=Schizosacc... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-716 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417786 ID=CF417786; Name=CF417786; organism=Citrus sinensis; type=EST; length=691bp
TTTCTCTCTCTTAGGGTTTTTCTTCGTGATTCACGTTAGTTCTTGTTTGG
GGNTTTTTATCTGTTTTCAACGTAAATCAATCAACAGAAAGCAATGCCTC
GGTACTACTGTGATTATTGTGACACCTATTTGACGCATGATTCTCCATCT
GTTAGAAAACAGCACAATGCAGGCTACAAGCACAAGGCAAATGTAAGAAG
CTACTATCAGCAATTTGAGGAACAACAAACCCAAAGTTTAATTGATCAGA
GAATCAAGGAACATCTTGGCCAAACTGCAGCTTTCCAGCAGGTTGGTGCC
GCATACAATCAGCATCTTTTGGCTCAGAGGCCCCGCCTTCCGGTTCTTCC
GACACCTGTTATGCCAATGACTGGAAGTGCTCCATTAGTCCCAGGGATGA
GGCCTCCTGTTCTTCCAAGACCAGGTCCGAGTCCTCCAGGTTATGTGTCT
GCTCCAGGCATGCCACCAATGATGGCACCTCCTGGTGCTCCTTCTGCACC
TGGTCAATTAAATGGTTTTCCAAGACCTCCTGCTGTAATGAACCCAACAG
CAGTTTCTGGTAGTGCGGCGCCACCTGCTTCATCCAGTGGAGCCCCTAGT
ATGGCTACACCTCAAACCTACCAAGCCAATCCAACAGTGCCAACGAGTGG
AAACCTTAATGCCCAAGCTCCTGAGATGAATCATTAGTGTG
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