CF417789

Overview
NameCF417789
Unique NameCF417789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417789_ssr232 microsatellite CF417789_ssr232:232..243. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4746 contig Csv1_Contig4746:480..1210. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 3.873e-91
Identity = 165/190 (86.84%), Postives = 173/190 (91.05%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR 572
            LLDEEFEAVVGDFGLA+LMDYKDTH TTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWV            VDPDLQ+NY EAEVEQLIQVALLCTQ SPM+RPKMSEVVRMLEGDGLAE+WDEWQKVEVLRQEVEL+ HP SDWI+DST+NLHA+ELSGPR
Sbjct:  439 LLDEEFEAVVGDFGLARLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYTEAEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAEKWDEWQKVEVLRQEVELSSHPTSDWILDSTDNLHAMELSGPR 628          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 331.643 bits (849), Expect = 2.511e-90
Identity = 162/190 (85.26%), Postives = 173/190 (91.05%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR 572
            LLDEEFEAVVGDFGLAKLMDYKDTH TTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWV            VDPDLQ NY E E+EQ+IQVALLCTQGSPM+RPKMSEVVRMLEGDGLAE+WDEWQKVE+LR+E++L+P+PNSDWI+DST NLHAVELSGPR
Sbjct:  436 LLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQTNYEERELEQVIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWDEWQKVEILREEIDLSPNPNSDWILDSTYNLHAVELSGPR 625          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.337e-75
Identity = 147/193 (76.17%), Postives = 155/193 (80.31%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPH--PNSDWIV-DSTENLHAVELSGPR 572
            LLDEEFEAVVGDFGLAKLMDYKDTH TTAVRGTIGHIAPEYLSTGKSSEKTDVFGYG+MLLELITGQRAFDLARLANDDDVMLLDWV            VD DLQ NY + EVEQLIQVALLCTQ SPM+RPKMSEVVRMLEGDGLAERW+EWQK E+ RQ+     H    S WI+ DST  +     SGPR
Sbjct:  423 LLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAERWEEWQKEEMFRQDFNYPTHHPAVSGWIIGDSTSQIENEYPSGPR 615          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 265.774 bits (678), Expect = 1.692e-70
Identity = 135/193 (69.95%), Postives = 154/193 (79.79%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQE--VELAPHPNSDWIVDSTENLHAVEL-SGPR 572
            LLDEEFEAVVGDFGLAKLM+Y D+H TTAVRGTIGHIAPEYLSTGKSSEKTDVFGYG+MLLELITGQ+AFDLARLANDDD+MLLDWV            VD +L+  YVE EVEQLIQ+ALLCTQ S M+RPKMSEVVRMLEGDGLAERW+EWQK E+   +   +  PH  +DW++  + +L   +  SGPR
Sbjct:  409 LLDEEFEAVVGDFGLAKLMNYNDSHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLARLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMALLCTQSSAMERPKMSEVVRMLEGDGLAERWEEWQKEEMPIHDFNYQAYPHAGTDWLIPYSNSLIENDYPSGPR 601          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 265.774 bits (678), Expect = 1.692e-70
Identity = 135/193 (69.95%), Postives = 154/193 (79.79%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQE--VELAPHPNSDWIVDSTENLHAVEL-SGPR 572
            LLDEEFEAVVGDFGLAKLM+Y D+H TTAVRGTIGHIAPEYLSTGKSSEKTDVFGYG+MLLELITGQ+AFDLARLANDDD+MLLDWV            VD +L+  YVE EVEQLIQ+ALLCTQ S M+RPKMSEVVRMLEGDGLAERW+EWQK E+   +   +  PH  +DW++  + +L   +  SGPR
Sbjct:  428 LLDEEFEAVVGDFGLAKLMNYNDSHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLARLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMALLCTQSSAMERPKMSEVVRMLEGDGLAERWEEWQKEEMPIHDFNYQAYPHAGTDWLIPYSNSLIENDYPSGPR 620          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.417e-63
Identity = 124/190 (65.26%), Postives = 142/190 (74.74%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR 572
            LLDE+FEAVVGDFGLAKL+D + T+ TT VRGT+GHIAPEYLSTGKSSE+TDVFGYGIMLLEL+TGQRA D +RL  +DDV+LLD V            VD +L   Y++ EVE +IQVALLCTQGSP DRP MSEVVRMLEG+GLAERW+EWQ VEV R+          DW  DS  N  A+ELSG R
Sbjct:  424 LLDEDFEAVVGDFGLAKLVDVRRTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLGAIVDKNLDGEYIKEEVEMMIQVALLCTQGSPEDRPVMSEVVRMLEGEGLAERWEEWQNVEVTRRHEFERLQRRFDWGEDSMHNQDAIELSGGR 613          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.304e-46
Identity = 95/150 (63.33%), Postives = 113/150 (75.33%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERW 452
            LLDE FEAVVGDFGLAKL++++D+H TTAVRGT+GHIAPEYLSTG+SSEKTDVFG+GI+LLELITG RA +  +  +    M L+WV            VD +L   Y   EV +++QVALLCTQ  P  RPKMSEVV+MLEGDGLAERW
Sbjct:  429 LLDEYFEAVVGDFGLAKLLNHEDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSVSQKGAM-LEWVRKLHKEMKVEELVDRELGTTYDRIEVGEMLQVALLCTQFLPAHRPKMSEVVQMLEGDGLAERW 577          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.017e-39
Identity = 93/193 (48.19%), Postives = 125/193 (64.77%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWD---EWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR 572
            LLDE FEA+VGDFGLAKL+D +D+H TTAVRGTIGHIAPEYLSTG+SSEKTDVFG+G+++LELITG +  D          M+L WV            VD DL+  + +  +E+++++ALLCTQ  P  RP+MS+V+++LE  GL E+ +   E +   V R       H    +I++      A+ELSGPR
Sbjct:  433 LLDESFEAIVGDFGLAKLLDQRDSHVTTAVRGTIGHIAPEYLSTGQSSEKTDVFGFGVLILELITGHKMIDQGN-GQVRKGMILSWVRTLKAEKRFAEMVDRDLKGEFDDLVLEEVVELALLCTQPHPNLRPRMSQVLKVLE--GLVEQCEGGYEARAPSVSRNYSN--GHEEQSFIIE------AIELSGPR 614          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.499e-26
Identity = 60/144 (41.67%), Postives = 91/144 (63.19%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGD 434
            L+D+EF A + DFGLAKL+D  ++H TT V GT G++APEY +TG  +EK+D++ +G++LLE ITG+   D  R AN  +V L++W+            VDP L+    ++ +++ + V+L C       RP+MS+V RMLE D
Sbjct:  316 LIDDEFNAKLSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPAN--EVNLVEWLKMMVGTRRAEEVVDPRLEPRPSKSALKRALLVSLRCVDPEAEKRPRMSQVARMLESD 457          
BLAST of CF417789 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.363e-26
Identity = 60/143 (41.96%), Postives = 87/143 (60.84%), Query Frame = 3
Query:    3 LLDEEFEAVVGDFGLAKLMDYKDTHXTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXXVDPDLQNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEG 431
            LLD++  A + DFGLAKL D  +TH +T + GTIG++APEY   G  +EK DV+ +G++ LE+++G+   +      +D V LLDW             VDP L ++Y E E   ++ VAL+CT  SP  RP MS+VV ++EG
Sbjct:  812 LLDKDLNAKISDFGLAKLNDDGNTHISTRIAGTIGYMAPEYAMRGYLTEKADVYSFGVVALEIVSGKSNTNFR--PTEDFVYLLDWAYVLQERGSLLELVDPTLASDYSEEEAMLMLNVALMCTNASPTLRPTMSQVVSLIEG 952          
The following BLAST results are available for this feature:
BLAST of CF417789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
SERK2_ARATH3.873e-9186.84Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
SERK1_ARATH2.511e-9085.26Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
BAK1_ARATH1.337e-7576.17BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
SERK5_ARATH1.692e-7069.95Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
SERK4_ARATH1.692e-7069.95Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
Y5129_ARATH3.417e-6365.26Probable LRR receptor-like serine/threonine-protei... [more]
Y2239_ARATH1.304e-4663.33Probable LRR receptor-like serine/threonine-protei... [more]
Y5457_ARATH2.017e-3948.19Probable LRR receptor-like serine/threonine-protei... [more]
Y2296_ARATH1.499e-2641.67Probable receptor-like protein kinase At2g42960 OS... [more]
Y1765_ARATH4.363e-2641.96Probable LRR receptor-like serine/threonine-protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-719 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417789 ID=CF417789; Name=CF417789; organism=Citrus sinensis; type=EST; length=723bp
TTTTGTTGGATGAGGAGTTTGAAGCTGTTGTTGGGGACTTTGGGTTGGCT
AAACTTATGGACTACAAGGATACCCATGNCACTACGGCAGTCCGTGGCAC
CATTGGGCATATAGCTCCAGAATACCTTTCTACTGGAAAATCTTCAGAGA
AAACTGATGTCTTTGGTTATGGGATTATGCTTCTAGAGCTAATCACTGGA
CAGAGAGCCTTTGATCTTGCTCGTCTTGCAAATGATGATGATGTCATGCT
GCTTGATTGGGTGAAAGGACTTCTGAAGGAAAAGAAGTTAGAAATGCTAG
TTGACCCTGATCTCCAGAACAATTATGTGGAAGCTGAGGTGGAGCAACTT
ATCCAGGTTGCGTTGCTCTGCACTCAAGGCTCCCCTATGGACCGGCCCAA
GATGTCGGAAGTTGTTAGAATGCTTGAAGGTGATGGCTTGGCAGAGCGGT
GGGATGAGTGGCAAAAGGTGGAAGTTCTCCGCCAAGAAGTAGAATTAGCC
CCTCATCCTAATTCAGATTGGATAGTTGACTCAACAGAAAATCTTCATGC
CGTTGAGTTATCTGGTCCAAGGTGACCCTGTCACTCCTATTAGCTATAAG
TAAAGAGGAAAATTTACTACTTTTTTTTATTCCTTTTTTTAATCATAATT
TTTCTTCTTTTTTTAATTTAACGATGATATCCTGATTTCTGTAAGCCCTT
CAGCATTGTATTCATTACACTTG
back to top