CF417790

Overview
NameCF417790
Unique NameCF417790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1939 contig Csv1_Contig1939:94..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 1.816e-96
Identity = 165/179 (92.18%), Postives = 173/179 (96.65%), Query Frame = 3
Query:   39 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            EYNGSA+VAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDR+FIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGPY CQPVIAGL D+DKPFICTMDSIGAKELAKDFVV+GTA ESLYGACEAM+KPDME +ELFET+SQALLSSVDRDCLSG G
Sbjct:    5 EYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGWG 183          

HSP 2 Score: 39.6614 bits (91), Expect = 1.816e-96
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 1
Query:  586 YIVTPTEIKERILKGRMD 639
            YIVTPTEIKERILKGRMD
Sbjct:  187 YIVTPTEIKERILKGRMD 204          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 1.278e-94
Identity = 164/179 (91.62%), Postives = 172/179 (96.09%), Query Frame = 3
Query:   39 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            EYNGSA+VAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHD LFIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGP+ CQPVIAGL D++KPFICTMDSIGAKELAKDFVV+GTA ESLYGACEAMFKPDME +ELFET+SQALLSSVDRDCLSG G
Sbjct:    5 EYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWG 183          

HSP 2 Score: 36.5798 bits (83), Expect = 1.278e-94
Identity = 15/18 (83.33%), Postives = 17/18 (94.44%), Query Frame = 1
Query:  586 YIVTPTEIKERILKGRMD 639
            Y+VTP E+KERILKGRMD
Sbjct:  187 YVVTPKEVKERILKGRMD 204          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 5.785e-92
Identity = 160/179 (89.39%), Postives = 172/179 (96.09%), Query Frame = 3
Query:   39 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRI KIHD+L++GLSGLATD QTLYQR  FRHKLYQLREER+M+PETFASLVSALLYEKRFGPYFCQPVIAGL ++DKPFICTMDSIGAKELAKDFVVAGTA ESLYGACE+M+KPDMEP+ELFET+SQALLSS+DRDCLSG G
Sbjct:    5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWG 183          

HSP 2 Score: 29.261 bits (64), Expect = 5.785e-92
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  586 YIVTPTEIKERILKGRMD 639
            Y+V+P ++ ER LKGRMD
Sbjct:  187 YVVSPNQVIERTLKGRMD 204          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 6.330e-91
Identity = 156/179 (87.15%), Postives = 173/179 (96.65%), Query Frame = 3
Query:   39 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            EYNGSA+VAMVGKNCFAIASDRRLGVQLQT+ATDFQR+ KIHD+L+IGLSGLATD+QTLYQRLVFRHKLYQLREERDMKP+TFASLVSALLYEKRFGPYFCQPVIAGL ++++PFICTMD IGAKELAKDFVV+GTA ESLYGACE+M+KP+MEP+ELFET+SQAL SSVDRDCLSG G
Sbjct:    5 EYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCLSGWG 183          

HSP 2 Score: 31.5722 bits (70), Expect = 6.330e-91
Identity = 12/17 (70.59%), Postives = 16/17 (94.12%), Query Frame = 1
Query:  589 IVTPTEIKERILKGRMD 639
            +VTPTE+KE ++KGRMD
Sbjct:  188 LVTPTEVKECVIKGRMD 204          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3_ONCMY (Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.399e-59
Identity = 107/179 (59.78%), Postives = 144/179 (80.45%), Query Frame = 3
Query:   42 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            YNG A++AM GK C AIA+DRR GVQ Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP+TF S+VS LLYE+RFGPY+ +PVIAGL  +  +PFIC++D IG   + +DFVV+GT  E +YG CE++++PDMEP++LFET+SQA+L++VDRD +SG+G
Sbjct:    6 YNGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPFICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAVSGMG 184          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3_SCHPO (Probable proteasome subunit beta type-3 OS=Schizosaccharomyces pombe GN=SPCC63.12c PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.168e-58
Identity = 103/179 (57.54%), Postives = 143/179 (79.89%), Query Frame = 3
Query:   39 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            EYNG + VAM GKNC AIASD RLGVQ  ++  +F ++  + D+ ++GL+GLATD QTLY+   ++  LY+ REER ++P+TFA+LVS+ LYEKRFGPYF  PV+AG+S+++ PFIC  DSIG  + A+DF+V+GTA E LYG CE++++P++EPD+LFET+SQALL++ DRDC+SG G
Sbjct:    5 EYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCISGWG 183          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3_HUMAN (Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 7.110e-58
Identity = 106/179 (59.22%), Postives = 141/179 (78.77%), Query Frame = 3
Query:   42 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+PD LFET+SQA+L++VDRD +SG+G
Sbjct:    6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMG 184          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3_RAT (Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.069e-57
Identity = 105/179 (58.66%), Postives = 141/179 (78.77%), Query Frame = 3
Query:   42 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG+G
Sbjct:    6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMG 184          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3_MOUSE (Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.069e-57
Identity = 105/179 (58.66%), Postives = 141/179 (78.77%), Query Frame = 3
Query:   42 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG+G
Sbjct:    6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMG 184          
BLAST of CF417790 vs. ExPASy Swiss-Prot
Match: PSB3_DICDI (Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.702e-57
Identity = 104/179 (58.10%), Postives = 134/179 (74.86%), Query Frame = 3
Query:   42 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDK-PFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGLG 575
            YNG A + MVGKNC AIASD R G+Q QTI+ DF ++ +I+D+ F+G+SGL TD+QTLYQ+LVFRH LY+LREERDM P   ++L++ +LYEKRFGPYF +P+I GL   D  PFI  MD IGA     DF+V GT   ++YG CE ++K DM  D+LFET+SQ +L+S+DRD LSG G
Sbjct:    6 YNGGACIVMVGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDAQTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLEGPDNTPFISGMDLIGASVATDDFLVVGTMTPAMYGVCETLYKKDMNEDDLFETISQCMLASLDRDALSGWG 184          
The following BLAST results are available for this feature:
BLAST of CF417790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
PSB3A_ARATH1.816e-9692.18Proteasome subunit beta type-3-A OS=Arabidopsis th... [more]
PSB3B_ARATH1.278e-9491.62Proteasome subunit beta type-3-B OS=Arabidopsis th... [more]
PSB3_PICMA5.785e-9289.39Proteasome subunit beta type-3 OS=Picea mariana GN... [more]
PSB3_ORYSJ6.330e-9187.15Proteasome subunit beta type-3 OS=Oryza sativa sub... [more]
PSB3_ONCMY8.399e-5959.78Proteasome subunit beta type-3 OS=Oncorhynchus myk... [more]
PSB3_SCHPO4.168e-5857.54Probable proteasome subunit beta type-3 OS=Schizos... [more]
PSB3_HUMAN7.110e-5859.22Proteasome subunit beta type-3 OS=Homo sapiens GN=... [more]
PSB3_RAT2.069e-5758.66Proteasome subunit beta type-3 OS=Rattus norvegicu... [more]
PSB3_MOUSE2.069e-5758.66Proteasome subunit beta type-3 OS=Mus musculus GN=... [more]
PSB3_DICDI2.702e-5758.10Proteasome subunit beta type-3 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-720 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417790 ID=CF417790; Name=CF417790; organism=Citrus sinensis; type=EST; length=705bp
CATCAAGTCACTCTACAATTATAATTATGTCTATCACTGAGTACAATGGG
AGCGCACTCGTTGCGATGGTCGGAAAGAACTGCTTTGCCATTGCCAGCGA
TCGGCGCCTCGGCGTTCAGCTTCAGACAATAGCCACTGATTTTCAGCGAA
TTTCCAAAATTCACGATCGCCTTTTTATCGGCCTCTCTGGACTCGCCACT
GATTCCCAGACCTTGTATCAAAGGCTGGTGTTTCGTCACAAATTGTATCA
GCTGCGAGAGGAAAGGGACATGAAGCCTGAAACTTTTGCTAGCTTAGTCT
CTGCTTTGCTTTATGAGAAAAGGTTTGGCCCTTACTTCTGTCAACCTGTT
ATTGCTGGATTGAGTGATGAAGACAAGCCCTTTATCTGCACAATGGACTC
AATTGGAGCCAAGGAGCTTGCAAAAGATTTTGTTGTTGCTGGAACTGCTG
GAGAGTCTCTTTATGGTGCCTGTGAGGCAATGTTCAAGCCTGATATGGAA
CCCGATGAGTTGTTTGAAACTGTATCTCAAGCTTTGTTATCATCTGTTGA
CCGTGACTGTTTGAGTGGGTTGGGGAGGACATGTCTACATTGTAACACCA
ACTGAAATAAAGGAAAGAATCTTGAAGGGAAGGATGGATTGATCTATAAC
TGCAGTGCTGAAAGCCACCCCTTCTGTTGCGTTCACTCTTCAGTATTTTT
TAATT
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