CF417793

Overview
NameCF417793
Unique NameCF417793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4227 contig Csv1_Contig4227:373..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 8.683e-98
Identity = 172/175 (98.29%), Postives = 173/175 (98.86%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DVTEF TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA1_PEA (Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 8.683e-98
Identity = 172/175 (98.29%), Postives = 173/175 (98.86%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DVTEF TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 1.934e-97
Identity = 171/175 (97.71%), Postives = 173/175 (98.86%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DVTEF TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA6_ARATH (Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 2.526e-97
Identity = 171/175 (97.71%), Postives = 172/175 (98.29%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DVTEF TNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 2.526e-97
Identity = 171/175 (97.71%), Postives = 172/175 (98.29%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DVTEF TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMY KRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYTKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 2.526e-97
Identity = 171/175 (97.71%), Postives = 172/175 (98.29%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DVTEF TNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 2.526e-97
Identity = 171/175 (97.71%), Postives = 172/175 (98.29%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DVTEF TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQF DWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVTEFRTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFADWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 3.300e-97
Identity = 170/175 (97.14%), Postives = 173/175 (98.86%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DVTEF TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVA+IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAF+HWYV
Sbjct:  235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVASIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFIHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 2.139e-96
Identity = 168/175 (96.00%), Postives = 172/175 (98.29%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DVTEF TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKV RAVCMISNST++AEVFSRIDHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYV 409
[Close]
BLAST of CF417793 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 2.139e-96
Identity = 167/175 (95.43%), Postives = 173/175 (98.86%), Query Frame = 3 
Query:    3 ISSLTASLRFDGALNXDVTEFXTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 527
            ISSLTASLRFDGALN DVTEF TNLVPYPRIHFMLSSY+PVISAEKA+HEQLSVAEITNSAFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNST++AEVFSR+DHKFDLMYAKRAFVHWYV
Sbjct:  235 ISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYSPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYV 409
The following BLAST results are available for this feature:
BLAST of CF417793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
TBA_PRUDU8.683e-9898.29Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 ... [more]
TBA1_PEA8.683e-9898.29Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE... [more]
TBA1_ANEPH1.934e-9797.71Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUB... [more]
TBA6_ARATH2.526e-9797.71Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=T... [more]
TBA4_GOSHI2.526e-9797.71Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA2_ARATH2.526e-9797.71Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali... [more]
TBA1_GOSHI2.526e-9797.71Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA2_GOSHI3.300e-9797.14Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA_OXYGR2.139e-9696.00Tubulin alpha chain OS=Oxytricha granulifera PE=3 ... [more]
TBA_CHLVU2.139e-9695.43Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-723 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417793 ID=CF417793; Name=CF417793; organism=Citrus sinensis; type=EST; length=529bp
TGATCTCATCCCTTACTGCTTCTTTGAGGTTTGATGGAGCTCTGAATGNG
GATGTGACTGAGTTCCANACCAATTTGGTTCCCTATCCAAGGATCCATTT
CATGCTCTCCTCTTATGCCCCAGTTATCTCTGCTGAGAAGGCATTCCATG
AGCAACTTTCAGTTGCTGAGATCACCAACAGTGCTTTTGAGCCATCATCC
ATGATGGCCAAATGTGACCCTCGTCATGGCAAGTACATGGCCTGCTGCTT
GATGTATCGTGGTGATGTTGTGCCTAAGGATGTGAATGCAGCTGTGGCCA
CCATCAAGACCAAGCGCACAATTCAGTTTGTTGACTGGTGCCCTACTGGA
TTCAAGTGCGGTATCAACTATCAGCCACCAACTGTGGTCCCTGGTGGTGA
CCTTGCCAAGGTGCAGAGGGCTGTCTGCATGATTTCCAACTCCACCAGCG
TTGCTGAAGTGTTTTCTCGCATTGATCACAAGTTTGACCTAATGTATGCC
AAGCGTGCTTTTGTGCACTGGTATGTTGG
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