CF417806

Overview
NameCF417806
Unique NameCF417806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10330 contig Csv1_Contig10330:703..1326. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417806 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.243e-30
Identity = 65/142 (45.77%), Postives = 96/142 (67.61%), Query Frame = 3
Query:    3 YPPCPQPEVVMGLPPRSDHGLLTILMQ-NDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLNGKSCLDHVKV 425
            YPPCPQP+ V+GL P SD   LT+LMQ ND  GL ++ DGKW+PV P P +F+VNIGD +EI++NG Y+S+ HR VVN +  R+S+AT H   +   VGPA+ L++ + +   ++ +  +EY     S  L+GK+ LD +++
Sbjct:  218 YPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQ-KVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358          
BLAST of CF417806 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.960e-27
Identity = 58/121 (47.93%), Postives = 80/121 (66.12%), Query Frame = 3
Query:    3 YPPCPQPEVVMGLPPRSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREY 365
            YPPCP+P++ +G+   +D   LT+L+ N+  GL V  D +WI     P + V++IGD +EILSNGKYK+VLHR  VN   TR+S      PP DTVVGP   L+D+EN PP Y+  K+++Y
Sbjct:  206 YPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDEN-PPKYKAKKFKDY 325          
BLAST of CF417806 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 61/144 (42.36%), Postives = 83/144 (57.64%), Query Frame = 3
Query:    3 YPPCPQPEVVMGLPPRSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGP---PLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLNGKSCLDHVKV 425
            YPPCPQPE+ MG    +D G +TIL+Q+D  GL V H   W+ V P PGS VVNIGD +++LSN KY SV HRA+ N   +R+S+    G        + GP  +LL  +N PP YR    +++     +  L+G S L   K+
Sbjct:  221 YPPCPQPELTMGTIQHTDIGFVTILLQDDMGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNVGSRMSITCFFGESPYQSSKLYGPITELLSEDN-PPKYRATTVKDHTSYLHNRGLDGTSALSRYKI 363          
BLAST of CF417806 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.274e-25
Identity = 61/132 (46.21%), Postives = 86/132 (65.15%), Query Frame = 3
Query:   33 MGLPPRSDHGLLTILMQNDHV-GLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLNGKSCLDHVKV 425
            +GL P SD   LT+L+Q + V GLH++ D KW+P+ P  G+FVVNIGD +EI+SNG YKS+ HRAV+N    R+S+A  H P   T +GP  DL+  +     Y+ I Y +YL    + +L+GKS LD +K+
Sbjct:  223 LGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLV--KENGVKYKTIDYEDYLIRSSNIKLDGKSLLDQMKL 352          
BLAST of CF417806 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 55/126 (43.65%), Postives = 82/126 (65.08%), Query Frame = 3
Query:    3 YPPCPQPEVVMGLPPRSDHGLLTILMQNDHV-GLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNE-NRPPLYRGIKYREYLQL 374
            YPPCP+PE++ GL   +D G L +L Q+D V GLHV  DGKW+ V P   S V+N+GD +E+++NGKYKSV+HR +      R+S+A+ + P  D V+ PA  L++ E  +  LY    + +Y++L
Sbjct:  163 YPPCPKPELIKGLRAHTDAGGLILLFQDDKVSGLHVLKDGKWVDVPPMHHSIVINLGDQLEVITNGKYKSVMHRVIAQEDGNRMSIASFYNPGNDAVIYPAPALVEGEQEKTKLYPKFVFDDYMKL 288          
BLAST of CF417806 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 3
Query:    3 YPPCPQPEVVMGLPPRSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPL---DTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLNGKSCLDHVKV 425
            YPPCPQP++ +GL   SD+  LTIL+Q+   GL V HD  W+ V P PG+ VVN+GD +++++N K+ SV HR + N    RISVA      L     V GP +++L  EN PP YR     EY +  +S   +G S L ++K+
Sbjct:  223 YPPCPQPDLTLGLTKHSDNSFLTILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRISVACFFSSYLMANPRVYGPIKEILSEEN-PPNYRDTTITEYAKFYRSKGFDGTSGLLYLKI 365          
BLAST of CF417806 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 52/124 (41.94%), Postives = 77/124 (62.10%), Query Frame = 3
Query:    3 YPPCPQPEVVMGLPPRSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQL 374
            YP CP P+  +G PP  D  L+T+L+     GL V + G WI V+P P +FVVN G  +E+++NG  KS+ HRA+ N    R SVAT   P  + ++GPA++ L  EN PP YR   +R+++++
Sbjct:  194 YPSCPNPDKALGQPPHCDRNLITLLLPGAVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNSALARTSVATFIMPTQECLIGPAKEFLSKEN-PPCYRTTMFRDFMRI 316          
BLAST of CF417806 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.408e-24
Identity = 57/122 (46.72%), Postives = 76/122 (62.30%), Query Frame = 3
Query:    3 YPPCPQPEVVMGLPPRSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYL 368
            YPPCP+P++ +G+   +D   +TIL+ ND  GL    DG+W  V   P + V++IGD MEI+SNGKY SVLHR  VN   TRIS      PP D VVGP   L++  N+P  Y+  KY +Y+
Sbjct:  208 YPPCPRPDLALGVVAHTDMSTVTILVPNDVQGLQACKDGRWYDVKYIPNALVIHIGDQMEIMSNGKYTSVLHRTTVNKDKTRISWPVFLEPPADHVVGPHPQLVNAVNQPK-YKTKKYGDYV 328          
BLAST of CF417806 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.402e-24
Identity = 61/129 (47.29%), Postives = 80/129 (62.02%), Query Frame = 3
Query:    3 YPPCPQPEVVMGLPPRSDHGLLTILMQNDHVGLHV-RHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSN 386
            YP CP+P+  MGL   +D  LLTIL QN+  GL V R D  W+ V P PGS VVN+GD   ILSNG +KSVLHRA VN    R+SVA   GP  D  + P   L+ +    PLY+ + ++EYL+ + ++
Sbjct:  217 YPVCPEPDRAMGLAAHTDSTLLTILYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRARLSVAFLWGPQSDIKISPVPKLV-SPVESPLYQSVTWKEYLRTKATH 344          
BLAST of CF417806 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24
Identity = 52/134 (38.81%), Postives = 81/134 (60.45%), Query Frame = 3
Query:    3 YPPCPQPEVVMGLPPRSDHGLLTILMQNDHVG-LHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLNGK 401
            YPPCP+P++V GL   +D G + +L Q+D VG L +  DG+W+ V P   S VVN+GD +E+++NG+YKSV+HR V      R+S+A+ + P  D V+ PA  L+  E     Y    + +Y++L   ++   K
Sbjct:  168 YPPCPRPDLVEGLRAHTDAGGIILLFQDDRVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVIHRVVAQTDGNRMSIASFYNPGSDAVISPAPALVKEEEAVVAYPKFVFEDYMKLYVRHKFEAK 301          
The following BLAST results are available for this feature:
BLAST of CF417806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
SRG1_ARATH2.243e-3045.77Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
FLS_CITUN3.960e-2747.93Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
ACCH3_SOLLC1.965e-2642.361-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
NCS1_COPJA1.274e-2546.21S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
ACCO3_CUCME2.838e-2543.651-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
ACCH1_ARATH3.706e-2542.361-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
IDS3_HORVU4.840e-2541.942'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
FLS_MALDO1.408e-2446.72Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
G3OX1_ARATH2.402e-2447.29Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
ACCO1_ORYSJ6.989e-2438.811-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-736 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417806 ID=CF417806; Name=CF417806; organism=Citrus sinensis; type=EST; length=628bp
TATACCCTCCTTGTCCACAGCCAGAAGTAGTGATGGGGCTGCCCCCTCGT
TCGGATCATGGCCTCTTAACCATCCTTATGCAGAATGACCATGTAGGTCT
TCACGTACGGCACGATGGCAAATGGATTCCCGTCAATCCTCCACCCGGCT
CTTTCGTAGTCAACATAGGAGACCACATGGAGATACTAAGTAACGGAAAG
TACAAGAGCGTGTTGCACAGAGCAGTAGTGAACGGCAAAGCAACAAGAAT
CTCCGTTGCAACAGCACACGGGCCTCCTCTTGACACGGTCGTGGGCCCTG
CTCAGGATTTGCTTGACAATGAGAACCGACCCCCGTTGTATCGTGGGATC
AAATATAGAGAGTATTTGCAGCTTCAACAGAGCAATCAACTGAATGGGAA
ATCCTGCTTGGACCACGTCAAAGTCAATATCAATGATACGTGTTGCAAAT
AAATTTGTTTAATTATCACTTTCCAGATGAGATGATTGTGATGTGCTGCT
TTATAATTTATTTATAATAAGAGATGTAAATTAAATAAATTCTATTACTT
GTTATGTTAATGGAAGATAATTGATTAAACTCTTAACATATAATTGGGAT
GTGGCCGGCTCAAAGCATTAATTTTGTC
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