CF417809

Overview
NameCF417809
Unique NameCF417809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig483 contig Csv1_Contig483:1..537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDHC2_ARATH (Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.200e-41
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKALAYSCXS 270
            SALSAASSACDHIRDWV+GTPEGT+VSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGL ID+ SRKK+DLTAEEL EEK LAYSC S
Sbjct:  243 SALSAASSACDHIRDWVVGTPEGTFVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLPIDDASRKKMDLTAEELKEEKDLAYSCLS 332          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDHC_MEDSA (Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.492e-41
Identity = 80/90 (88.89%), Postives = 86/90 (95.56%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKALAYSCXS 270
            SALSAAS+ACDHIRDWVLGTP+GT+VSMGVYSDGSYNVP+GLIYSFPVTC NGEW IVQGLSIDEFSRKKLDLTAEEL+EEK LA+SC S
Sbjct:  243 SALSAASAACDHIRDWVLGTPQGTFVSMGVYSDGSYNVPSGLIYSFPVTCANGEWKIVQGLSIDEFSRKKLDLTAEELTEEKNLAHSCLS 332          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDHC1_ARATH (Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.016e-40
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKALAYSCXS 270
            SALSAASSACDHIRDWVLGTPEGT+VSMGVYSDGSY+VP+GLIYSFPVTCRNG+W+IVQGL IDE SRKK+DLTAEEL EEK LAYSC S
Sbjct:  243 SALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYSVPSGLIYSFPVTCRNGDWSIVQGLPIDEVSRKKMDLTAEELKEEKDLAYSCLS 332          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDHC_ORYSJ (Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 1.327e-40
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKALAYSC 264
            SALSAASSACDHIRDWVLGTPEGT+VSMGVYSDGSY VPAGLIYSFPVTC  GEWTIVQGL IDEFSRKK+D TA+ELSEEK LAYSC
Sbjct:  243 SALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPAGLIYSFPVTCSGGEWTIVQGLPIDEFSRKKMDATAQELSEEKTLAYSC 330          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDHC_MESCR (Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.956e-40
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKALAYSC 264
            SALSAASSACDHI DWVLGTPEGTWVSMGVYSDGSYNVPAG+IYSFPVTC+NGEWTIVQGL ID+ SRKK+D TA EL EEK LAYSC
Sbjct:  243 SALSAASSACDHIHDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKNGEWTIVQGLPIDDDSRKKMDATAAELVEEKTLAYSC 330          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDHC_BETVU (Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.123e-39
Identity = 76/88 (86.36%), Postives = 81/88 (92.05%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKALAYSC 264
            SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAG+IYSFPVTC++GEW IVQGL IDE SR+K+D T  EL EEKALAYSC
Sbjct:  243 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGIIYSFPVTCKDGEWKIVQGLPIDEVSRQKMDATGAELVEEKALAYSC 330          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDHC_MAIZE (Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 3.268e-39
Identity = 76/88 (86.36%), Postives = 81/88 (92.05%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKALAYSC 264
            SALSAASSACDHIRDWVLGTPEGT+VSMGVYSDGSY VP+GLIYSFPVTC  GEW IVQGL IDEFSRKK+D TA+EL+EEK LAYSC
Sbjct:  243 SALSAASSACDHIRDWVLGTPEGTFVSMGVYSDGSYGVPSGLIYSFPVTCSGGEWKIVQGLPIDEFSRKKMDATAQELTEEKTLAYSC 330          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_DEIGD (Malate dehydrogenase OS=Deinococcus geothermalis (strain DSM 11300) GN=mdh PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.390e-28
Identity = 57/82 (69.51%), Postives = 67/82 (81.71%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 246
            SA SAAS+A DH+RDW LGTPEG WVSM V SDGSY +P GLIY FPV CRNG++ IVQGL I +FSR+K+D TA+EL EE+
Sbjct:  243 SAASAASAAIDHMRDWALGTPEGEWVSMAVPSDGSYGIPEGLIYGFPVRCRNGQYEIVQGLEISDFSRQKMDATAKELEEER 324          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_ALCBS (Malate dehydrogenase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.288e-27
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 246
            SA SAA++A DH+R W LGT EG WVSMG+YSDGSY +  GLIYSFP TC+NG+WTIVQGL +++FSR K+  T +EL+EE+
Sbjct:  239 SAASAANAAVDHMRSWALGTDEGDWVSMGIYSDGSYGIQEGLIYSFPCTCKNGDWTIVQGLEVNDFSRGKMQATEQELAEER 320          
BLAST of CF417809 vs. ExPASy Swiss-Prot
Match: MDH_HALHL (Malate dehydrogenase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=mdh PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.682e-27
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 1
Query:    1 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 246
            SA SAAS+A DH+RDW LGTPEG W SM V SDGSY + AGLIYSFPVTCR G++ IV GLS+D+FSR ++D TA EL+EE+
Sbjct:  237 SAASAASAAIDHMRDWALGTPEGEWTSMAVPSDGSYGIEAGLIYSFPVTCRGGDYKIVSGLSVDDFSRARMDQTAAELAEER 318          
The following BLAST results are available for this feature:
BLAST of CF417809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
MDHC2_ARATH1.200e-4190.00Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis... [more]
MDHC_MEDSA3.492e-4188.89Malate dehydrogenase, cytoplasmic OS=Medicago sati... [more]
MDHC1_ARATH1.016e-4087.78Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis... [more]
MDHC_ORYSJ1.327e-4089.77Malate dehydrogenase, cytoplasmic OS=Oryza sativa ... [more]
MDHC_MESCR2.956e-4087.50Malate dehydrogenase, cytoplasmic OS=Mesembryanthe... [more]
MDHC_BETVU1.123e-3986.36Malate dehydrogenase, cytoplasmic OS=Beta vulgaris... [more]
MDHC_MAIZE3.268e-3986.36Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2... [more]
MDH_DEIGD3.390e-2869.51Malate dehydrogenase OS=Deinococcus geothermalis (... [more]
MDH_ALCBS1.288e-2764.63Malate dehydrogenase OS=Alcanivorax borkumensis (s... [more]
MDH_HALHL1.682e-2768.29Malate dehydrogenase OS=Halorhodospira halophila (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-739 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417809 ID=CF417809; Name=CF417809; organism=Citrus sinensis; type=EST; length=537bp
AGTGCTCTGTCTGCTGCTAGCTCTGCTTGTGACCATATCCGTGATTGGGT
TCTTGGAACTCCTGAGGGCACTTGGGTCTCCATGGGGGTATACTCTGATG
GTTCATACAATGTACCAGCTGGGCTCATTTACTCATTCCCAGTAACCTGC
CGCAACGGTGAATGGACAATTGTTCAAGGACTCAGCATTGATGAATTCTC
AAGGAAGAAGTTGGACTTGACAGCAGAGGAGCTCTCCGAGGAGAAGGCCC
TCGCATACTCATGTNTCTCTTAAATGCTTTCTTCCCTTCAATAGTGTGTT
ACCAAGGCCCTTAGCTTTGTCTGAGTAGTTGGTAGAGTTACAGTTTCGAA
TAAAACCATTGTTGAAACCTGGAGGAACCATTGATGATGGAGAAGCCTTT
CCATCTTATGTTGCTATTTCTGCATTTGAATATCGGGATTTTGGAGTTTT
GTTACTTTTCCTGGATAAATGGATATTAAATGCCCATTGTGATTTATGTA
TCAAACTATCAATAACAGTTTTTTTTTTTTTTTTAAA
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