CF417816

Overview
NameCF417816
Unique NameCF417816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:154..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417816 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.035e-21
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 3
Query:   54 MSDTCGNCXXXDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 251
            MSDTCGNC   D++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CF417816 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.523e-17
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 3
Query:   63 TCGNCXXXDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 254
            TCGNC   D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CF417816 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.859e-16
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 3
Query:   54 MSDTCGNCXXXDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 248
            MSD CGNC   D SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CF417816 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.495e-14
Identity = 36/65 (55.38%), Postives = 42/65 (64.62%), Query Frame = 3
Query:   54 MSDTCGNCXXXDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 248
            MS  C NC   D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CF417816 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.785e-14
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   54 MSDTCGNCXXXDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 251
            MS  C NC   D +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CF417816 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.958e-13
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 3
Query:   54 MSDTCGNCXXXDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 251
            MSD CGNC   D+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CF417816 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.958e-13
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 3
Query:   54 MSDTCGNCXXXDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 251
            MSD CGNC   D+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CF417816 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 3
Query:   54 MSDTCGNCXXXDRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 251
            MSD CGNC   D+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CF417816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MT3_CARPA5.035e-2165.15Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC7.523e-1757.81Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE2.859e-1663.08Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV3.495e-1455.38Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO7.785e-1454.55Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ2.958e-1350.00Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI2.958e-1350.00Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ4.723e-1145.45Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-746 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417816 ID=CF417816; Name=CF417816; organism=Citrus sinensis; type=EST; length=528bp
ATAAAGAGCCCTCTATTTCCAGTTTTAAGTTCTAAGTTCTAAGCTCAATC
AACATGTCGGACACCTGCGGCAACTGCGANTGNGNTGACAGGAGCCAGTG
TGTGAAGAAGGGAAGCAGCTATGCTGCTGACTTCGTCGAGACTGACTTGA
GCTTTGTCAGCACCGTTGTTGTCATGGACGTTCAGGCTGCTGAGGCTGAA
GGTAACTGCAAGTGCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGTGG
TAGTCACTAATAAGCAAACACATGCAGCAAAAAATAAGAAGCTGCAAGTG
TGCCTAAATATTGTGGGGGTTAAGAATAATGTAAGGGTGATTAAAAAAAA
AAAGAAAAATTCTCTACTTCGTTTTTATGATGGTCTACTACTAGTGTGTG
GAGTGATGTGCGTGTTGTGTCACCCATCACTCGTAATGTTTTGTGTTTCC
TTCTTCATAATCATGTAATATATGGCCATGGCCATGACCGTGGCCTTGTG
TGGTTTAATTTTAATGTATTATTGTTAG
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