CF417831
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2) HSP 1 Score: 399.438 bits (1025), Expect = 1.602e-113 Identity = 192/207 (92.75%), Postives = 197/207 (95.17%), Query Frame = 3 Query: 3 PIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRP 623 PIFWGLMTLSTFGNLESTTEW EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAM LKMRNIEWWM+KR LP GFRQRVRNYERQRWAAMRGVDECEM+ NLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGE I KEGD VQRMLFVVRGHLQSSQ+L + +KSCCMLGPGNFSGDELLSWCLRRP Sbjct: 369 PIFWGLMTLSTFGNLESTTEWSEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMHLKMRNIEWWMKKRHLPIGFRQRVRNYERQRWAAMRGVDECEMVQNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRP 575 HSP 2 Score: 31.5722 bits (70), Expect = 1.602e-113 Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 2 Query: 623 FIERLPPSSSTLITL 667 F+ERLPPSSSTL+TL Sbjct: 576 FVERLPPSSSTLVTL 590
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1) HSP 1 Score: 273.478 bits (698), Expect = 8.345e-74 Identity = 127/208 (61.06%), Postives = 164/208 (78.85%), Query Frame = 3 Query: 3 PIFWGLMTLSTFGN-LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRP 623 PIFWGLMTLSTF N LE T+ WLEV+F+I+++ SGLLL T+LIGNI+VFLHA +KK+ MQ++ R++EWWM++RQLP RQRVR +ERQRW A+ G DE E+I +LP GLRRDIK +LC DL+ +VPLF+ MDDL+L+NICDR K +F+K E I +EGDPVQRM+F++RG ++ Q L + + L PG + GDELLSWCLRRP Sbjct: 403 PIFWGLMTLSTFANDLEPTSNWLEVIFSIVMVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQIRCRDMEWWMKRRQLPSRLRQRVRRFERQRWNALGGEDELELIHDLPPGLRRDIKRYLCFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRP 610 HSP 2 Score: 25.0238 bits (53), Expect = 8.345e-74 Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 2 Query: 623 FIERLPPSSSTLITL 667 F++RLPPSS+T + L Sbjct: 611 FLDRLPPSSATFVCL 625
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 1.417e-49 Identity = 95/206 (46.12%), Postives = 140/206 (67.96%), Query Frame = 3 Query: 6 IFWGLMTLSTFG-NLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCL 614 ++WGL LS+ G NL ++T E++F II+ T GL+L +LIGN++ +L +TT + + +++ + E WM RQLP RQ VR Y++ +W A RGVDE ++ +LP LRRDIK HLC DLVR+VPLF MD+ +L+ IC+R+K + T+G + +EGDPV MLF++RGHL S + + C++GPG+F G+ELL+W L Sbjct: 344 LWWGLKNLSSLGQNLATSTYAGEILFAIIIATLGLVLFALLIGNMQTYLQSTTMRLEEWRIRRTDTEQWMHHRQLPPELRQAVRKYDQYKWLATRGVDEEALLISLPLDLRRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCLIGPGDFCGEELLTWAL 549
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 2.046e-48 Identity = 95/206 (46.12%), Postives = 140/206 (67.96%), Query Frame = 3 Query: 6 IFWGLMTLSTFGN-LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCL 614 ++WGL LST G LE++T +E++F+I + SGL+L +LIGN++ +L + T + + M++K R+ E WM R LPQ R+RVR Y++ +W RGVDE ++ NLP+ LRRDIK HLCL LVR+VPLF+ MDD +L+ IC R+K +FT+ + +EGDPV MLF++RG L+S + + + +L G F G+ELL+W L Sbjct: 371 LWWGLQNLSTLGQGLETSTYPMEIIFSISLAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPQDLRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWAL 576
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2) HSP 1 Score: 191.815 bits (486), Expect = 2.673e-48 Identity = 95/206 (46.12%), Postives = 141/206 (68.45%), Query Frame = 3 Query: 6 IFWGLMTLSTFGN-LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCL 614 ++WGL LST G LE++T EV+F+I + +GLLL +LIGN++ +L + T + + M++K R+ E WM R LP R+RVR Y++ +W RGVDE ++ NLP+ LRRDIK HLCL LVR+VPLF++MD+ +L+ IC+R+K +FT+ + +EGDPV MLF++RG L+S + + + +L G+F GDELL+W L Sbjct: 387 LWWGLQNLSTLGQGLETSTYPGEVIFSITLAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWAL 592
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 1.326e-47 Identity = 93/206 (45.15%), Postives = 141/206 (68.45%), Query Frame = 3 Query: 6 IFWGLMTLSTFGN-LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCL 614 ++WGL LST G LE++T EV+F+I + +GLLL +LIGN++ +L + T + + M++K R+ E WM R LP R+RVR Y++ +W RGVDE ++ NLP+ LRRDIK HLCL LVR+VPLF++MD+ +L+ IC+R+K ++T+ + +EGDPV MLF++RG L+S + + + +L G+F G+ELL+W L Sbjct: 386 LWWGLQNLSTLGQGLETSTYPGEVIFSIALAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWAL 591
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2) HSP 1 Score: 189.119 bits (479), Expect = 1.732e-47 Identity = 93/206 (45.15%), Postives = 142/206 (68.93%), Query Frame = 3 Query: 6 IFWGLMTLSTFGN-LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCL 614 ++WGL LST G L+++T EV+F+I + +GLLL +LIGN++ +L + T + + M++K R+ E WM R LPQ R+RVR Y++ +W RGVDE ++ +LP+ LRRDIK HLCL+LVR+VPLF +MD+ +L+ IC+R+K ++T+ I +EGDPV MLF++RG L+S + + + +L G+F G+ELL+W L Sbjct: 381 LWWGLQNLSTLGQGLQTSTYPGEVLFSIAIAVAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWAL 586
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 2.262e-47 Identity = 93/206 (45.15%), Postives = 142/206 (68.93%), Query Frame = 3 Query: 6 IFWGLMTLSTFGN-LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCL 614 ++WGL LST G L+++T EV+F+I + +GLLL +LIGN++ +L + T + + M++K R+ E WM R LPQ R+RVR Y++ +W RGVDE ++ +LP+ LRRDIK HLCL+LVR+VPLF +MD+ +L+ IC+R+K +FT+ I +EGDPV M+F++RG L+S + + + +L G+F G+ELL+W L Sbjct: 375 LWWGLQNLSTLGQGLQTSTFPGEVLFSIAIAIAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWAL 580
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 5.040e-47 Identity = 94/206 (45.63%), Postives = 136/206 (66.02%), Query Frame = 3 Query: 6 IFWGLMTLSTFGNLESTTEWL-EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCL 614 ++WGL LS++G STT ++ E F +++ GL+L LIGN++ +L + T + + +LK R+ E WMR RQLP+ R RVR YE+ +W A RGVDE ++ +LP LRRDI+ HLCLDLVR+VP F MDD +L+ IC+R+ S + T+G + +EGD + MLF++RG L+SS + +L PG+F G+ELLSW L Sbjct: 354 LWWGLQQLSSYGQNLSTTMFMGETTFAVLIAIFGLVLFAHLIGNMQTYLQSLTVRLEEWRLKKRDTEEWMRHRQLPEELRNRVRRYEQYKWLATRGVDEEVLLQSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNSIILRPGDFCGEELLSWAL 559
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2) HSP 1 Score: 187.193 bits (474), Expect = 6.583e-47 Identity = 96/206 (46.60%), Postives = 138/206 (66.99%), Query Frame = 3 Query: 6 IFWGLMTLSTFG-NLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCL 614 +++GL LS++G NL ++T LE +F I+V GL+L +LIGN++ +L + T + + +LK R+ E WM R LPQ R+RVR + + +W A RGVDE ++ +LP LRRDI+ HLCLDLVR+VPLF MDD +L+ IC+R+ S + T+G I +EGDPV MLF++RG L+SS + L PG+F G+ELL+W L Sbjct: 354 LWFGLQNLSSYGQNLSTSTSVLETMFAILVAIFGLVLFALLIGNMQTYLQSITVRLEEWRLKRRDTEEWMGHRLLPQNLRERVRRFVQYKWLATRGVDEETILHSLPADLRRDIQRHLCLDLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWAL 559 The following BLAST results are available for this feature:
BLAST of CF417831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417831 ID=CF417831; Name=CF417831; organism=Citrus sinensis; type=EST; length=667bpback to top |