CF417831

Overview
NameCF417831
Unique NameCF417831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 399.438 bits (1025), Expect = 1.602e-113
Identity = 192/207 (92.75%), Postives = 197/207 (95.17%), Query Frame = 3
Query:    3 PIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRP 623
            PIFWGLMTLSTFGNLESTTEW EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAM LKMRNIEWWM+KR LP GFRQRVRNYERQRWAAMRGVDECEM+ NLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGE I KEGD VQRMLFVVRGHLQSSQ+L + +KSCCMLGPGNFSGDELLSWCLRRP
Sbjct:  369 PIFWGLMTLSTFGNLESTTEWSEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMHLKMRNIEWWMKKRHLPIGFRQRVRNYERQRWAAMRGVDECEMVQNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRP 575          

HSP 2 Score: 31.5722 bits (70), Expect = 1.602e-113
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 2
Query:  623 FIERLPPSSSTLITL 667
            F+ERLPPSSSTL+TL
Sbjct:  576 FVERLPPSSSTLVTL 590          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.345e-74
Identity = 127/208 (61.06%), Postives = 164/208 (78.85%), Query Frame = 3
Query:    3 PIFWGLMTLSTFGN-LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQILHNNIKSCCMLGPGNFSGDELLSWCLRRP 623
            PIFWGLMTLSTF N LE T+ WLEV+F+I+++ SGLLL T+LIGNI+VFLHA  +KK+ MQ++ R++EWWM++RQLP   RQRVR +ERQRW A+ G DE E+I +LP GLRRDIK +LC DL+ +VPLF+ MDDL+L+NICDR K  +F+K E I +EGDPVQRM+F++RG ++  Q L   + +   L PG + GDELLSWCLRRP
Sbjct:  403 PIFWGLMTLSTFANDLEPTSNWLEVIFSIVMVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQIRCRDMEWWMKRRQLPSRLRQRVRRFERQRWNALGGEDELELIHDLPPGLRRDIKRYLCFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRP 610          

HSP 2 Score: 25.0238 bits (53), Expect = 8.345e-74
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  623 FIERLPPSSSTLITL 667
            F++RLPPSS+T + L
Sbjct:  611 FLDRLPPSSATFVCL 625          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.417e-49
Identity = 95/206 (46.12%), Postives = 140/206 (67.96%), Query Frame = 3
Query:    6 IFWGLMTLSTFG-NLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCL 614
            ++WGL  LS+ G NL ++T   E++F II+ T GL+L  +LIGN++ +L +TT + +  +++  + E WM  RQLP   RQ VR Y++ +W A RGVDE  ++ +LP  LRRDIK HLC DLVR+VPLF  MD+ +L+ IC+R+K  + T+G  + +EGDPV  MLF++RGHL S  +        + C++GPG+F G+ELL+W L
Sbjct:  344 LWWGLKNLSSLGQNLATSTYAGEILFAIIIATLGLVLFALLIGNMQTYLQSTTMRLEEWRIRRTDTEQWMHHRQLPPELRQAVRKYDQYKWLATRGVDEEALLISLPLDLRRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCLIGPGDFCGEELLTWAL 549          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.046e-48
Identity = 95/206 (46.12%), Postives = 140/206 (67.96%), Query Frame = 3
Query:    6 IFWGLMTLSTFGN-LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCL 614
            ++WGL  LST G  LE++T  +E++F+I +  SGL+L  +LIGN++ +L + T + + M++K R+ E WM  R LPQ  R+RVR Y++ +W   RGVDE  ++ NLP+ LRRDIK HLCL LVR+VPLF+ MDD +L+ IC R+K  +FT+   + +EGDPV  MLF++RG L+S  +    +   +  +L  G F G+ELL+W L
Sbjct:  371 LWWGLQNLSTLGQGLETSTYPMEIIFSISLAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPQDLRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWAL 576          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 2.673e-48
Identity = 95/206 (46.12%), Postives = 141/206 (68.45%), Query Frame = 3
Query:    6 IFWGLMTLSTFGN-LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCL 614
            ++WGL  LST G  LE++T   EV+F+I +  +GLLL  +LIGN++ +L + T + + M++K R+ E WM  R LP   R+RVR Y++ +W   RGVDE  ++ NLP+ LRRDIK HLCL LVR+VPLF++MD+ +L+ IC+R+K  +FT+   + +EGDPV  MLF++RG L+S  +    +   +  +L  G+F GDELL+W L
Sbjct:  387 LWWGLQNLSTLGQGLETSTYPGEVIFSITLAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWAL 592          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.326e-47
Identity = 93/206 (45.15%), Postives = 141/206 (68.45%), Query Frame = 3
Query:    6 IFWGLMTLSTFGN-LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCL 614
            ++WGL  LST G  LE++T   EV+F+I +  +GLLL  +LIGN++ +L + T + + M++K R+ E WM  R LP   R+RVR Y++ +W   RGVDE  ++ NLP+ LRRDIK HLCL LVR+VPLF++MD+ +L+ IC+R+K  ++T+   + +EGDPV  MLF++RG L+S  +    +   +  +L  G+F G+ELL+W L
Sbjct:  386 LWWGLQNLSTLGQGLETSTYPGEVIFSIALAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWAL 591          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.732e-47
Identity = 93/206 (45.15%), Postives = 142/206 (68.93%), Query Frame = 3
Query:    6 IFWGLMTLSTFGN-LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCL 614
            ++WGL  LST G  L+++T   EV+F+I +  +GLLL  +LIGN++ +L + T + + M++K R+ E WM  R LPQ  R+RVR Y++ +W   RGVDE  ++ +LP+ LRRDIK HLCL+LVR+VPLF +MD+ +L+ IC+R+K  ++T+   I +EGDPV  MLF++RG L+S  +    +   +  +L  G+F G+ELL+W L
Sbjct:  381 LWWGLQNLSTLGQGLQTSTYPGEVLFSIAIAVAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWAL 586          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.262e-47
Identity = 93/206 (45.15%), Postives = 142/206 (68.93%), Query Frame = 3
Query:    6 IFWGLMTLSTFGN-LESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQS--SQILHNNIKSCCMLGPGNFSGDELLSWCL 614
            ++WGL  LST G  L+++T   EV+F+I +  +GLLL  +LIGN++ +L + T + + M++K R+ E WM  R LPQ  R+RVR Y++ +W   RGVDE  ++ +LP+ LRRDIK HLCL+LVR+VPLF +MD+ +L+ IC+R+K  +FT+   I +EGDPV  M+F++RG L+S  +    +   +  +L  G+F G+ELL+W L
Sbjct:  375 LWWGLQNLSTLGQGLQTSTFPGEVLFSIAIAIAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWAL 580          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.040e-47
Identity = 94/206 (45.63%), Postives = 136/206 (66.02%), Query Frame = 3
Query:    6 IFWGLMTLSTFGNLESTTEWL-EVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCL 614
            ++WGL  LS++G   STT ++ E  F +++   GL+L   LIGN++ +L + T + +  +LK R+ E WMR RQLP+  R RVR YE+ +W A RGVDE  ++ +LP  LRRDI+ HLCLDLVR+VP F  MDD +L+ IC+R+ S + T+G  + +EGD +  MLF++RG L+SS          +  +L PG+F G+ELLSW L
Sbjct:  354 LWWGLQQLSSYGQNLSTTMFMGETTFAVLIAIFGLVLFAHLIGNMQTYLQSLTVRLEEWRLKKRDTEEWMRHRQLPEELRNRVRRYEQYKWLATRGVDEEVLLQSLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNSIILRPGDFCGEELLSWAL 559          
BLAST of CF417831 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 6.583e-47
Identity = 96/206 (46.60%), Postives = 138/206 (66.99%), Query Frame = 3
Query:    6 IFWGLMTLSTFG-NLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRQLPQGFRQRVRNYERQRWAAMRGVDECEMISNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGEVITKEGDPVQRMLFVVRGHLQSSQIL--HNNIKSCCMLGPGNFSGDELLSWCL 614
            +++GL  LS++G NL ++T  LE +F I+V   GL+L  +LIGN++ +L + T + +  +LK R+ E WM  R LPQ  R+RVR + + +W A RGVDE  ++ +LP  LRRDI+ HLCLDLVR+VPLF  MDD +L+ IC+R+ S + T+G  I +EGDPV  MLF++RG L+SS          +   L PG+F G+ELL+W L
Sbjct:  354 LWFGLQNLSSYGQNLSTSTSVLETMFAILVAIFGLVLFALLIGNMQTYLQSITVRLEEWRLKRRDTEEWMGHRLLPQNLRERVRRFVQYKWLATRGVDEETILHSLPADLRRDIQRHLCLDLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWAL 559          
The following BLAST results are available for this feature:
BLAST of CF417831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CNGC4_ARATH1.602e-11392.75Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNGC2_ARATH8.345e-7461.06Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNG15_ARATH1.417e-4946.12Putative cyclic nucleotide-gated ion channel 15 OS... [more]
CNGC5_ARATH2.046e-4846.12Probable cyclic nucleotide-gated ion channel 5 OS=... [more]
CNGC6_ARATH2.673e-4846.12Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC9_ARATH1.326e-4745.15Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNGC8_ARATH1.732e-4745.15Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC7_ARATH2.262e-4745.15Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNG17_ARATH5.040e-4745.63Probable cyclic nucleotide-gated ion channel 17 OS... [more]
CNG14_ARATH6.583e-4746.60Probable cyclic nucleotide-gated ion channel 14 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-761 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417831 ID=CF417831; Name=CF417831; organism=Citrus sinensis; type=EST; length=667bp
TTCCCATCTTTTGGGGCTTGATGACTCTCAGCACTTTTGGGAATCTGGAG
AGCACAACAGAATGGCTAGAAGTAGTTTTCAACATCATCGTTTTAACAAG
TGGGCTCCTTCTAGTCACCATGTTGATTGGAAATATAAAGGTGTTCTTGC
ATGCAACAACATCAAAGAAGCAAGCAATGCAATTGAAGATGAGGAACATA
GAATGGTGGATGAGGAAAAGGCAATTGCCTCAAGGGTTCAGGCAGCGGGT
TCGCAACTACGAGCGGCAGCGATGGGCGGCAATGCGCGGTGTTGATGAGT
GTGAGATGATCAGTAACCTCCCTGAGGGCTTAAGAAGGGACATCAAGTAT
CATCTCTGCTTGGACTTAGTAAGACAGGTACCATTGTTCCAACATATGGA
TGATTTGGTTTTGGAGAATATTTGTGATCGAGTGAAGTCTCTCATATTTA
CAAAGGGTGAAGTGATAACAAAAGAGGGTGACCCAGTACAAAGAATGCTA
TTTGTAGTAAGAGGGCATCTTCAAAGCAGCCAAATTCTCCACAACAACAT
CAAAAGTTGCTGCATGTTGGGCCCTGGAAACTTCAGTGGCGATGAGCTTC
TATCCTGGTGCCTTCGGAGACCTTCATCGAAAGGCTACCGCCATCTTCAT
CTACTTTAATAACCCTG
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