CF417832 | Citrus Genome Database

Overview


Name	CF417832
Unique Name	CF417832
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	455

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7003	contig	Csv1_Contig7003:144..600.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 5.900e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 2

Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 5.900e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 2

Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 5.900e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 2

Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 5.900e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 2

Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 5.900e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 2

Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 5.900e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 2

Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 5.900e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 2

Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 5.900e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 2

Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 5.900e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 2

Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of CF417832 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 5.900e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 2

Query:    2 NIQGITKPAIRRLAXRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 235
            NIQGITKPAIRRLA RGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of CF417832 vs. ExPASy Swiss-Prot

BLAST of CF417832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107


Match Name	E-value	Identity	Description
H4_SILLA	5.900e-37	98.72	Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3	[more]
H4_PEA	5.900e-37	98.72	Histone H4 OS=Pisum sativum PE=1 SV=2	[more]
H4_MAIZE	5.900e-37	98.72	Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2	[more]
H4_LOLTE	5.900e-37	98.72	Histone H4 OS=Lolium temulentum PE=3 SV=2	[more]
H4_FLATR	5.900e-37	98.72	Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3	[more]
H4_EUCGL	5.900e-37	98.72	Histone H4 OS=Eucalyptus globulus PE=3 SV=3	[more]
H4_CHEMJ	5.900e-37	98.72	Histone H4 OS=Chelidonium majus PE=3 SV=3	[more]
H4_ARATH	5.900e-37	98.72	Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE...	[more]
H42_WHEAT	5.900e-37	98.72	Histone H4 variant TH091 OS=Triticum aestivum PE=3...	[more]
H41_WHEAT	5.900e-37	98.72	Histone H4 variant TH011 OS=Triticum aestivum PE=3...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-762 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_F09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417832 ID=CF417832; Name=CF417832; organism=Citrus sinensis; type=EST; length=455bp
TAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCNTAGGG
GTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACACGTGGCGTT
CTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGA
GCACGCTCGGAGGAAGACGGTGACGGCGATGGACGTCGTGTACGCGCTCA
AGAGGCAGGGCAGGACTCTCTACGGGTTTGGTGGTTAAAGAAGTTGGTAT
CGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTT
TTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTTAA
ATGGGAATCTTGGTTTAATTTGTTAATGGTGTTTGCATTTTGTAAGGTTA
ATGACCTATGATTTTGAGTAGAATTAACGATAGATGGTTGTGGAGCTTCT
TGGTA