CF417837

Overview
NameCF417837
Unique NameCF417837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5646 contig Csv1_Contig5646:71..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: VP322_ARATH (Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.351e-53
Identity = 109/147 (74.15%), Postives = 115/147 (78.23%), Query Frame = 2
Query:   86 MFTRLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526
            M  RLFGKPKQE NAL TLD                          AK+YS+AKNKRAAIQCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEAL+TP+
Sbjct:    1 MMNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPM 147          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: VP321_ARATH (Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.273e-52
Identity = 108/143 (75.52%), Postives = 113/143 (79.02%), Query Frame = 2
Query:   95 RLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTP 523
            RLFGKPKQET+ L TLD                          AK++S+AKNKRAAIQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS P
Sbjct:    5 RLFGKPKQETSTLQTLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRAKNKRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAP 147          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: SNF7_KLULA (Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis GN=SNF7 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.920e-14
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  224 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526
            AK   ++ NK  A   LK+K+LYE Q+++L +    +  Q+  +E A    ET+ A++ GAS MK + K  ++D VD TMDEI EQ E  ++I EA+S P+
Sbjct:   48 AKKSLQSGNKNNAKTYLKKKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAISKPL 148          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: SNF7_CANGA (Vacuolar-sorting protein SNF7 OS=Candida glabrata GN=SNF7 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.682e-12
Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  224 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526
            A+ +    NK  A   LK+K++YE Q+ +L +    +  Q+  +E A    ET+ A++ GA  MK++    +ID VD+TMDEI EQ E  ++I +A+S P+
Sbjct:   49 ARKFLTRGNKTMAKNALKKKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQGAKAMKSIHSGLDIDRVDETMDEIREQVELGEEISDAISRPL 149          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: SNF7_CANAL (Vacuolar-sorting protein SNF7 OS=Candida albicans GN=SNF7 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.870e-12
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 2
Query:  224 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526
            A+ Y  +K    A   LKRK+ YE  + ++ N    +  Q+I +EGA    ET+ A++ GA  MK +    ++D V+ TMDEI EQ E   +I EA+S P+
Sbjct:   49 ARKYVSSKQTTLAKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQGAKAMKQIHGEYDVDKVEDTMDEIREQVELADEISEAISRPV 149          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: SNF7_ASHGO (Vacuolar-sorting protein SNF7 OS=Ashbya gossypii GN=SNF7 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.748e-12
Identity = 36/101 (35.64%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  224 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526
            A+ +    NK  A   LKRK+++E Q+ ++      +  Q+  +E A    ET+ A++ GAS MK + +  +++ VD+TMDEI EQ E  ++I EA+S P+
Sbjct:   50 ARHFLSKGNKNMAKAALKRKKVFESQLLKIDKQVDSLEQQLYSIENANLNLETMKAMKQGASAMKHIHEGLDVERVDETMDEIREQVELGEEISEAISRPL 150          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHM4B_DANRE (Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.895e-12
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 2
Query:  245 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I EQ E  ++I +A+S P+
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQEISDAISKPV 151          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: SNF7_SCHPO (Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe GN=snf7 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.349e-12
Identity = 32/93 (34.41%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  248 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526
            NKR A+  LKRK+++E ++ ++   +  I  Q+  ++ A    ET+ A+R GA  MK++Q+  + D VD+ MD+I +Q    ++I   +STP+
Sbjct:   56 NKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMISTPV 148          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHM4C_DANRE (Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.349e-12
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  245 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 526
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MK   +  +ID VD  M +I EQ E  ++I +A+S P+
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQEISDAISRPV 151          
BLAST of CF417837 vs. ExPASy Swiss-Prot
Match: CHMP5_XENTR (Charged multivesicular body protein 5 OS=Xenopus tropicalis GN=chmp5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.860e-11
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 2
Query:  236 SKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS 517
            SK   K+ A++ LK+KR+YEQQ + L      +      ++  K T  TVDA++ GA  MK   K   ID ++   D++ +  EN  +IQEALS
Sbjct:   57 SKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAIQSLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALS 150          
The following BLAST results are available for this feature:
BLAST of CF417837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
VP322_ARATH3.351e-5374.15Vacuolar protein sorting-associated protein 32 hom... [more]
VP321_ARATH1.273e-5275.52Vacuolar protein sorting-associated protein 32 hom... [more]
SNF7_KLULA8.920e-1440.59Vacuolar-sorting protein SNF7 OS=Kluyveromyces lac... [more]
SNF7_CANGA1.682e-1236.63Vacuolar-sorting protein SNF7 OS=Candida glabrata ... [more]
SNF7_CANAL2.870e-1237.62Vacuolar-sorting protein SNF7 OS=Candida albicans ... [more]
SNF7_ASHGO3.748e-1235.64Vacuolar-sorting protein SNF7 OS=Ashbya gossypii G... [more]
CHM4B_DANRE4.895e-1241.49Charged multivesicular body protein 4b OS=Danio re... [more]
SNF7_SCHPO8.349e-1234.41Vacuolar-sorting protein snf7 OS=Schizosaccharomyc... [more]
CHM4C_DANRE8.349e-1240.43Charged multivesicular body protein 4c OS=Danio re... [more]
CHMP5_XENTR1.860e-1137.23Charged multivesicular body protein 5 OS=Xenopus t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-767 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417837 ID=CF417837; Name=CF417837; organism=Citrus sinensis; type=EST; length=639bp
GTCAGAATCCCATTTTTTTTTTCCCTCNTTTTTATAATTACNGAGGTAAA
ATCGAGGGTTTTTGATTAATCGCGGAGANTCAAACATGTTTACTCGGCTT
TTTGGAAAACCTAAACAGGAAACCAATGCCTTAACCACGCTCGATAAGCT
AAATGAAACTCTTGAAATGCTAGAGAAAAAGGAGAAAGTACTCCTGAAAA
AGGCTTCTGTAGAGGTTGAAAAGGCCAAGGACTACTCCAAAGCAAAGAAC
AAAAGAGCGGCCATACAATGTTTGAAGAGGAAGAGGCTATACGAACAGCA
AATAGAGCAGCTTGGGAATTTCCAATTGCGCATTCATGATCAGATGATAA
TGCTAGAAGGTGCTAAAGCCACAACTGAGACTGTAGATGCATTGAGGACG
GGAGCATCGACAATGAAGGCTATGCAGAAAGCAACGAACATAGATGATGT
GGATAAGACCATGGATGAGATCAATGAGCAGACCGAGAACATGAAGCAGA
TTCAAGAAGCATTATCAACTCCTATTGGTGCTGCTGCTGATTTCNATGAG
GATGAATTGGAAGCAGAACTTGAAGAACTGGAAGGTGCTGAGTTGGAAGA
GCAGCTTCTACAGCCAGCCTACAACAGCTCCTGCTGCTC
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