CF417859

Overview
NameCF417859
Unique NameCF417859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13646 contig Csv1_Contig13646:41..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417859 vs. ExPASy Swiss-Prot
Match: SIZ1_ARATH (E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 5.460e-47
Identity = 92/159 (57.86%), Postives = 121/159 (76.10%), Query Frame = 2
Query:    2 INCSTPMNG-YTLAPDTSXGSASLVPGCTVGAAADMSDALVDNPLAFDREDPSLQIFLPTRPSDTSVQTELRDQADVANGIRTEDWISLRLGDGVTGGQNELAAANGLNSKQPVHSRESAMDSLADTASLLLGMNEGRSEKASRQRSDSPFSFPRQKRS 475
            +NCS  +NG YT+AP+TS  S  +VPG T    ++ +D LVDNPLAF R+DPSLQIFLPT+P D S Q+  ++QAD++NG+R+EDWISLRLGD  +G   + A  NG+NS   + +RE +MD+  +TASLLLGMN+ R +KA +QRSD+PFSFPRQKRS
Sbjct:  704 LNCSPEINGGYTMAPETSMASVPVVPGST--GRSEANDGLVDNPLAFGRDDPSLQIFLPTKP-DASAQSGFKNQADMSNGLRSEDWISLRLGDSASGNHGDPATTNGINSSHQMSTREGSMDTTTETASLLLGMNDSRQDKAKKQRSDNPFSFPRQKRS 859          
BLAST of CF417859 vs. ExPASy Swiss-Prot
Match: SIZ1_ORYSJ (E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp. japonica GN=SIZ1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29
Identity = 76/168 (45.24%), Postives = 105/168 (62.50%), Query Frame = 2
Query:   23 NGYTLAPDTSXGSASLVPGCTVGAAA-DMSDALVDNPLAFDREDPSLQIFLPTRPSDTSVQTELRDQADVANGIRTEDWISLRLGDGVTGGQNELAAANGLNSKQPVHSRESAMDSLADTASLLLGMNEGRSEKA--SRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE 517
            N Y+L  +     AS+ P  +V   + +M  +LVDNPLA   +DPSLQIFLP++PS   +Q EL ++A+  NG++++DWISL L  G  GG NE  A   +NS+  + S E+ ++ L D AS  L  N  R   A  + +R ++ FS PRQ RSVRPRL LSID+DSE
Sbjct:  710 NDYSLDCNVGVEEASVTPALSVCRNSNEMHGSLVDNPLALVGDDPSLQIFLPSQPSSVPLQEELSERANAPNGVQSDDWISLTLAAG--GGGNEEPAPADVNSQPQIPSTETGIEPLTDAASAFLSTNIERRSGADLNPRRIENIFSHPRQPRSVRPRLCLSIDTDSE 875          
The following BLAST results are available for this feature:
BLAST of CF417859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SIZ1_ARATH5.460e-4757.86E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thalian... [more]
SIZ1_ORYSJ6.706e-2945.24E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-789 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-010_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417859 ID=CF417859; Name=CF417859; organism=Citrus sinensis; type=EST; length=691bp
TATCAACTGTTCAACTCCAATGAATGGTTATACATTGGCTCCAGATACTT
CANTGGGTTCTGCATCTTTAGTCCCAGGTTGTACTGTTGGAGCTGCTGCC
GATATGAGTGATGCCTTAGTGGACAATCCCTTGGCTTTTGACCGGGAAGA
CCCCTCTCTTCAAATATTTCTTCCAACAAGGCCTTCAGATACTTCTGTAC
AGACCGAGTTGAGAGATCAAGCTGACGTGGCCAACGGTATTCGTACTGAG
GATTGGATCTCCCTTCGGCTTGGGGATGGTGTCACCGGCGGTCAAAATGA
GTTAGCAGCTGCAAACGGATTAAATTCGAAACAGCCAGTACATTCCAGAG
AAAGTGCTATGGATTCTTTAGCTGACACTGCTTCTTTGCTTCTTGGTATG
AACGAAGGAAGATCTGAGAAGGCAAGCAGGCAAAGGTCGGATAGTCCATT
CTCATTTCCCCGCCAAAAACGCTCTGTAAGACCGCGATTGTATCTCTCTA
TTGACTCAGACTCGGAATAGAAAATTTTGGACCATATAAAATCATGAAAA
TACTGGGAGATCATGGTTGACCATTTCTGGGATCGAAGGCTTTCTCCCTG
AGTGGTTTGTTGCTCAGCCCCTCTCNAAGTAGAAGAAAGTGGACAAATAT
TATGGACCTTGTGAAATGTTCCATGTGGTGTGAGAAATACA
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