CF417875

Overview
NameCF417875
Unique NameCF417875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417875_ssr322 microsatellite CF417875_ssr322:322..333. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig486 contig Csv1_Contig486:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417875 vs. ExPASy Swiss-Prot
Match: DNJB6_BOVIN (DnaJ homolog subfamily B member 6 OS=Bos taurus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  101 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSXAAKRTVY 295
            YY VLG+ + ASA +I+ AYRKLALKWHPD   K+P    EA R+F+Q+ EAY VLS A KR +Y
Sbjct:    4 YYEVLGVQRHASAEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIY 65          
BLAST of CF417875 vs. ExPASy Swiss-Prot
Match: DNJB3_MOUSE (DnaJ homolog subfamily B member 3 OS=Mus musculus GN=Dnajb3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 40/65 (61.54%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  101 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSXAAKRTVY 295
            YY VLG+ +QASA  IR AYRKLALKWHPD   K+P    EA RRF+Q+ +AY VLS   KR VY
Sbjct:    4 YYEVLGVPRQASAEAIRKAYRKLALKWHPD---KNPEHKEEAERRFKQVAQAYEVLSDVRKREVY 65          
BLAST of CF417875 vs. ExPASy Swiss-Prot
Match: DNJB6_CHICK (DnaJ homolog subfamily B member 6 OS=Gallus gallus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  101 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSXAAKRTVY 295
            YY VLG+ K ASA +I+ AYRKLALKWHPD   K+P    EA ++F+Q+ EAY VLS A KR +Y
Sbjct:    4 YYEVLGVQKHASAEDIKKAYRKLALKWHPD---KNPENKEEAEQQFKQVAEAYEVLSDAKKRDIY 65          
BLAST of CF417875 vs. ExPASy Swiss-Prot
Match: DNJB6_PONAB (DnaJ homolog subfamily B member 6 OS=Pongo abelii GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  101 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSXAAKRTVY 295
            YY VLG+ + AS  +I+ AYRKLALKWHPD   K+P    EA R+F+Q+ EAY VLS A KR +Y
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIY 65          
BLAST of CF417875 vs. ExPASy Swiss-Prot
Match: DNJB6_MACFA (DnaJ homolog subfamily B member 6 OS=Macaca fascicularis GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  101 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSXAAKRTVY 295
            YY VLG+ + AS  +I+ AYRKLALKWHPD   K+P    EA R+F+Q+ EAY VLS A KR +Y
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIY 65          
BLAST of CF417875 vs. ExPASy Swiss-Prot
Match: DNJB6_HUMAN (DnaJ homolog subfamily B member 6 OS=Homo sapiens GN=DNAJB6 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  101 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSXAAKRTVY 295
            YY VLG+ + AS  +I+ AYRKLALKWHPD   K+P    EA R+F+Q+ EAY VLS A KR +Y
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIY 65          
BLAST of CF417875 vs. ExPASy Swiss-Prot
Match: DNJ6A_XENLA (DnaJ homolog subfamily B member 6-A OS=Xenopus laevis GN=dnajb6-A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  101 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSXAAKRTVY 295
            YY VLG+ + ASA +I+ AYR+LALKWHPD   K+P    EA RRF+++ EAY VLS + KR +Y
Sbjct:    4 YYEVLGVQRNASADDIKKAYRRLALKWHPD---KNPDNKDEAERRFKEVAEAYEVLSDSKKRDIY 65          
BLAST of CF417875 vs. ExPASy Swiss-Prot
Match: DNJB6_XENTR (DnaJ homolog subfamily B member 6 OS=Xenopus tropicalis GN=dnajb6 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  101 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSXAAKRTVY 295
            YY VLG+ + AS  +I+ AYRKLALKWHPD   K+P    EA RRF+++ EAY VLS + KR +Y
Sbjct:    4 YYDVLGVQRNASPEDIKKAYRKLALKWHPD---KNPDNKDEAERRFKEVAEAYEVLSDSKKRDIY 65          
BLAST of CF417875 vs. ExPASy Swiss-Prot
Match: DNJB3_HUMAN (DnaJ homolog subfamily B member 3 OS=Homo sapiens GN=DNAJB3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.177e-13
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  101 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSXAAKRTVY 295
            YY VL + +QAS+  I+ AYRKLALKWHPD   K+P    EA RRF+Q+ EAY VLS A KR +Y
Sbjct:    4 YYEVLDVPRQASSEAIKKAYRKLALKWHPD---KNPENKEEAERRFKQVAEAYEVLSDAKKRDIY 65          
BLAST of CF417875 vs. ExPASy Swiss-Prot
Match: DNJB3_MACFU (DnaJ homolog subfamily B member 3 OS=Macaca fuscata fuscata GN=DNAJB3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.850e-13
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 2
Query:   95 ACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSXAAKRTVY 295
            A YY VLG+  Q    +I+ AYRKLALKWHPD   K+P    EA RRF+Q+ EAY VLS A KR VY
Sbjct:    2 ANYYEVLGVQVQRFPEDIKKAYRKLALKWHPD---KNPDNKEEAERRFKQVAEAYEVLSDAKKRDVY 65          
The following BLAST results are available for this feature:
BLAST of CF417875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DNJB6_BOVIN3.358e-1458.46DnaJ homolog subfamily B member 6 OS=Bos taurus GN... [more]
DNJB3_MOUSE3.358e-1461.54DnaJ homolog subfamily B member 3 OS=Mus musculus ... [more]
DNJB6_CHICK5.729e-1458.46DnaJ homolog subfamily B member 6 OS=Gallus gallus... [more]
DNJB6_PONAB1.276e-1356.92DnaJ homolog subfamily B member 6 OS=Pongo abelii ... [more]
DNJB6_MACFA1.276e-1356.92DnaJ homolog subfamily B member 6 OS=Macaca fascic... [more]
DNJB6_HUMAN1.276e-1356.92DnaJ homolog subfamily B member 6 OS=Homo sapiens ... [more]
DNJ6A_XENLA1.276e-1355.38DnaJ homolog subfamily B member 6-A OS=Xenopus lae... [more]
DNJB6_XENTR2.177e-1355.38DnaJ homolog subfamily B member 6 OS=Xenopus tropi... [more]
DNJB3_HUMAN2.177e-1358.46DnaJ homolog subfamily B member 3 OS=Homo sapiens ... [more]
DNJB3_MACFU4.850e-1358.21DnaJ homolog subfamily B member 3 OS=Macaca fuscat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-805 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417875 ID=CF417875; Name=CF417875; organism=Citrus sinensis; type=EST; length=670bp
GCAATTCAGTTCGGTTAACCTTAAAAAAAAAAAAAAAAAAAAAAAACCCT
CAATCGCGCTCTTGAAACTATCATTAAAGATGTCCGATACCGGGGCCTGT
TACTACTCCGTGCTCGGATTACATAAACAGGCCTCTGCATCTGAAATTCG
GGATGCTTACAGGAAGCTCGCTCTGAAATGGCATCCAGACAGATGGATGA
AAGATCCCACAGCAGCTGGAGAAGCCAACCGGCGATTCCAGCAAATTCAA
GAGGCTTATTCAGTTTTATCANATGCTGCAAAGAGAACAGTTTATGATGC
TGGATTGCTTANCCTCCTCGCTGATGATGATGACGAANAGTTTTGTGATT
TCATGCAAGAAATGGCTTTGATGATGGAAAGTGTAAGCCCACAGGAGGGA
TACACTTTGGAGCATCTTCAAGGATTGTTAACGGACATGATTGCGAATGA
ACAAAGAATCGGATTTGGATTTGCCGACGGTTGTGATTCTCATTTTCAAT
CCGCTAGAAAAAAGGGCTCGTGTTAGCCAGATGAAGTTTCATATTTGTGT
AACTCGATTTCTGCCCGCAGGCTTAGTGCATTATATTCTTTTTGCCCTGT
TTTGTGTGAAATGGGAAGAAGTATATCATCTTATCAAGAAAGTGATGATG
ATCCTATACATCCCCGCCTT
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