CF417881

Overview
NameCF417881
Unique NameCF417881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417881_ssr610 microsatellite CF417881_ssr610:610..621. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2263 contig Csv1_Contig2263:45..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417881 vs. ExPASy Swiss-Prot
Match: YDC1_SCHPO (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 35/97 (36.08%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:  172 AENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERAXXXXXXXXXXXXYLG 462
            +EN GN+L+V+G++ R+ + EL++ F+  G V  V ++ +P T+ SRGFGF++ +TVEEA   I  L+     GR++ V++A            Y+G
Sbjct:   96 SENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPGKYMG 192
[Close]
BLAST of CF417881 vs. ExPASy Swiss-Prot
Match: SAFB2_MOUSE (Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:  184 GNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMATVEEADRCIKYLDRSVLEGRIITVERA 417
            G NL+V+GLS      +L+  F+  GKVI   +V +  +  +R +GFVTM+T +EA +CI +L R+ L GR+I+VE+A
Sbjct:  450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEKA 527
The following BLAST results are available for this feature:
BLAST of CF417881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YDC1_SCHPO1.260e-1136.08Uncharacterized RNA-binding protein C25G10.01 OS=S... [more]
SAFB2_MOUSE8.165e-1143.59Scaffold attachment factor B2 OS=Mus musculus GN=S... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-811 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417881 ID=CF417881; Name=CF417881; organism=Citrus sinensis; type=EST; length=688bp
AAGGAAGAATCTCGAAACACACAGGCAAGAGAGTAGATTTTACAAGTACT
TGATACGATGTCTTACTCTAGGAGGTCAAGGTATTCACGCTCTTCTTCAC
CATACAATAGATACGGCAGGTCAATGTCTAGGTCAATGTCTCGCAGCCGA
TCAAGGAGCCGATCAAGTGATGCGGAAAATCCTGGCAACAATTTGTATGT
AACAGGATTGTCACCTCGTATCACCAAAAGAGAACTTGAGAAGCATTTTG
CAGCTGAGGGAAAGGTGATTGATGTTCACCTTGTGGTCGATCCGTGGACA
AGAGAGTCTCGTGGTTTTGGGTTTGTTACGATGGCCACAGTTGAGGAGGC
TGACCGTTGCATCAAGTATTTGGATCGTTCTGTTCTTGAGGGTCGCATCA
TTACTGTGGAGAGGGCAAGGAGGCGGAGAGGGCGAACTCCCACTCCAGGA
AGGTATTTGGGGCTGAGAACCATTCGTGTCTGTCGTCGATCACCTAGCAA
CTCTCCTCCTCGTCGATCTCCAAGCTACTCTCCTTATCGTTGGAGCAGAA
GTCGTTCTCCCAGTTATTCATCTGAACGGAGCAGGGACAGATCTTACTCT
CCTGACTATAGGAGGAGGAGGCCTTACTCCCCTAATTATAGCCGGCGTAG
ATCATACTCATCTTACTACAGTCGGCGCCGTTCTTATT
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