CF417896
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417896 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 4.918e-41 Identity = 94/167 (56.29%), Postives = 113/167 (67.66%), Query Frame = 1 Query: 109 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWKWEVCYAGPCCFGF 585 RS NQ +++ Y+P+LRRNV+L VR A PT P A PQP + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ + QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS M+SDAE W + G F Sbjct: 20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAF 186
BLAST of CF417896 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.715e-27 Identity = 58/115 (50.43%), Postives = 75/115 (65.22%), Query Frame = 1 Query: 229 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWKWEVCYAG 567 PT A P+P K + + + AFSGPAPERINGRLAM+GFVAAL VE ++G + Q+ G+AWFL T+ + +VASL+PL +G SVESKS G ++DAELW G Sbjct: 100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLG 213 HSP 2 Score: 33.8834 bits (76), Expect = 8.715e-27 Identity = 16/17 (94.12%), Postives = 16/17 (94.12%), Query Frame = 2 Query: 545 NGRFAMLGLVALAFTEF 595 NGRFAMLGLVALA TEF Sbjct: 206 NGRFAMLGLVALAATEF 222
BLAST of CF417896 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.939e-26 Identity = 71/173 (41.04%), Postives = 94/173 (54.34%), Query Frame = 1 Query: 52 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWKWEVCYAG 567 +AT ++S A V + RS A+ + + LP+L R L VR P+ P PP KP+ ST + AFSGPAPERINGRLAM+GFV AL VE +G + +QL G G AWF T +L++ASLVPL +G S E ++ M ++AELW G Sbjct: 1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLG 154 HSP 2 Score: 31.5722 bits (70), Expect = 1.939e-26 Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 2 Query: 545 NGRFAMLGLVALAFTE 592 NGRFAMLGLVALA TE Sbjct: 147 NGRFAMLGLVALAATE 162
BLAST of CF417896 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.526e-26 Identity = 54/105 (51.43%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 256 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWKWEVCYAG 567 PP KP+ ST + AFSGPAPERINGRLAM+GFV AL VE +G + +QL G G AWF T +L++ASLVPL +G S E ++ M ++AELW G Sbjct: 45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIG 149 HSP 2 Score: 30.8018 bits (68), Expect = 2.526e-26 Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2 Query: 545 NGRFAMLGLVALAFTE 592 NGRFAM+GLVALA TE Sbjct: 142 NGRFAMIGLVALAATE 157
BLAST of CF417896 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.300e-25 Identity = 73/188 (38.83%), Postives = 105/188 (55.85%), Query Frame = 1 Query: 40 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWKWEVCYAGPCCFGF 585 MA+S ++ A + T I R G N L K LP +RRN +VR T P + ++T + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF SDAE+W G F Sbjct: 1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAF 187
BLAST of CF417896 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.384e-13 Identity = 51/107 (47.66%), Postives = 59/107 (55.14%), Query Frame = 1 Query: 232 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAEL 540 T P + P PP P +EV FSG APE INGRLAM+GFVAALG E+S G+ V QL D L T VL + ASL+P F K D G T DAE+ Sbjct: 47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEM 147 HSP 2 Score: 22.7126 bits (47), Expect = 3.384e-13 Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 2 Query: 545 NGRFAMLGLVALAFTE 592 NGRFAM+G A+ E Sbjct: 149 NGRFAMIGFAAMLVYE 164 The following BLAST results are available for this feature:
BLAST of CF417896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417896 ID=CF417896; Name=CF417896; organism=Citrus sinensis; type=EST; length=630bpback to top |