CF417896

Overview
NameCF417896
Unique NameCF417896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417896_ssr200 microsatellite CF417896_ssr200:200..214. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:58..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417896 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.918e-41
Identity = 94/167 (56.29%), Postives = 113/167 (67.66%), Query Frame = 1
Query:  109 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWKWEVCYAGPCCFGF 585
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE W   +   G     F
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAF 186          
BLAST of CF417896 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.715e-27
Identity = 58/115 (50.43%), Postives = 75/115 (65.22%), Query Frame = 1
Query:  229 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWKWEVCYAG 567
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELW       G
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLG 213          

HSP 2 Score: 33.8834 bits (76), Expect = 8.715e-27
Identity = 16/17 (94.12%), Postives = 16/17 (94.12%), Query Frame = 2
Query:  545 NGRFAMLGLVALAFTEF 595
            NGRFAMLGLVALA TEF
Sbjct:  206 NGRFAMLGLVALAATEF 222          
BLAST of CF417896 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.939e-26
Identity = 71/173 (41.04%), Postives = 94/173 (54.34%), Query Frame = 1
Query:   52 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWKWEVCYAG 567
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELW       G
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLG 154          

HSP 2 Score: 31.5722 bits (70), Expect = 1.939e-26
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 2
Query:  545 NGRFAMLGLVALAFTE 592
            NGRFAMLGLVALA TE
Sbjct:  147 NGRFAMLGLVALAATE 162          
BLAST of CF417896 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.526e-26
Identity = 54/105 (51.43%), Postives = 68/105 (64.76%), Query Frame = 1
Query:  256 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWKWEVCYAG 567
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELW       G
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIG 149          

HSP 2 Score: 30.8018 bits (68), Expect = 2.526e-26
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 2
Query:  545 NGRFAMLGLVALAFTE 592
            NGRFAM+GLVALA TE
Sbjct:  142 NGRFAMIGLVALAATE 157          
BLAST of CF417896 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.300e-25
Identity = 73/188 (38.83%), Postives = 105/188 (55.85%), Query Frame = 1
Query:   40 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWKWEVCYAGPCCFGF 585
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+W       G     F
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAF 187          
BLAST of CF417896 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.384e-13
Identity = 51/107 (47.66%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  232 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAEL 540
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEM 147          

HSP 2 Score: 22.7126 bits (47), Expect = 3.384e-13
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 2
Query:  545 NGRFAMLGLVALAFTE 592
            NGRFAM+G  A+   E
Sbjct:  149 NGRFAMIGFAAMLVYE 164          
The following BLAST results are available for this feature:
BLAST of CF417896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA4.918e-4156.29Early light-induced protein, chloroplastic OS=Pisu... [more]
ELI5_HORVU8.715e-2750.43High molecular mass early light-inducible protein ... [more]
ELI9_HORVU1.939e-2641.04Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU2.526e-2651.43Low molecular mass early light-inducible protein H... [more]
DS22_CRAPL1.300e-2538.83Desiccation stress protein DSP-22, chloroplastic O... [more]
CBR_DUNBA3.384e-1347.66Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-826 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417896 ID=CF417896; Name=CF417896; organism=Citrus sinensis; type=EST; length=630bp
AATTATACTTTGTTCTGTTTTCTACTTCATAAATTAAAAATGGCCGCATC
ACTTGCTACTCAATCTATGCTGGCAAGTCCTGTAGCAGCTCGTGTGACTG
GTATCAGGAGATCCGGGGCAAACCAACTTTCCTCCGTCAAGTACTTGCCT
AGTCTGCGTAGAAATGTCAACTTATCCGTGCGCTGCACGGCAGAGGATGA
GCAGCAGCAGCAGCAGAAAGATGATCAACCAACCATACCGAAAGCTGAGC
CTCAGCCACCAAAGAAGCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTC
GCGTTCAGCGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGCGATGAT
TGGGTTCGTGGCTGCATTGGGGGTGGAGATATCCAAGGGTCAGGATGTGT
TTGCCCAGTTATCAGACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTT
TTGCTCACGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGA
GTCTAAATCGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGAAATGGG
AGGTTTGCTATGCTGGGCCTTGTTGCTTTGGCTTTCACCGAGTTTGGTTA
AGGGTGGCACCCTTGTTTAAGCTTAATTTT
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