CF417915 | Citrus Genome Database

Overview


Name	CF417915
Unique Name	CF417915
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	708

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig11471	contig	Csv1_Contig11471:89..794.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: BAS1_ORYSJ (2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 4.307e-71
Identity = 124/160 (77.50%), Postives = 132/160 (82.50%), Query Frame = 2

Query:  122 PRSFSGLRNPLQSQVPRPVSLSRGSRSRKSFVVKAS-VEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            P S S  R P    +    S SR +R+  SFV +A  V+  PLVGN APDF AEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRY EFEKLNTEILGVS DSVFSHLAWVQTDRKSGGLGDLKYPLI+D+TKSISKS+GVLIP  G
Sbjct:   28 PHSLSLPRAPAARPLRLSASSSRSARA-SSFVARAGGVDDAPLVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEILGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQG 186

HSP 2 Score: 52.373 bits (124), Expect = 4.307e-71
Identity = 24/29 (82.76%), Postives = 28/29 (96.55%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLRTL 708
            ++ K+GVIQHSTINNLAIGRSVDET+RTL
Sbjct:  194 IIDKEGVIQHSTINNLAIGRSVDETMRTL 222

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: BAS1B_ARATH (2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 1.772e-69
Identity = 113/135 (83.70%), Postives = 121/135 (89.63%), Query Frame = 2

Query:  194 SRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            S SR++F VKA  +  PLVGN APDF AEAVFDQEFI VKLS+YIGKKYVILFFYPLDFTFVCPTEITAFSDRY EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPL++DITKSISKS+GVLIP  G
Sbjct:   62 SASRRNFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDITKSISKSFGVLIPDQG 196

HSP 2 Score: 50.8322 bits (120), Expect = 1.772e-69
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLRTL 708
            ++ K+GVIQHSTINNL IGRSVDET+RTL
Sbjct:  204 IIDKEGVIQHSTINNLGIGRSVDETMRTL 232

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: BAS1_SPIOL (2-Cys peroxiredoxin BAS1, chloroplastic OS=Spinacia oleracea GN=BAS1 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.772e-69
Identity = 119/149 (79.87%), Postives = 128/149 (85.91%), Query Frame = 2

Query:  152 LQSQVPRPVSLSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            L+S   R  SLS  S SR+SF VKA  +  PLVGN APDF AEAVFDQEFI VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR++EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPLI+D+TKSISKS+GVLI   G
Sbjct:   45 LRSGFARRSSLS--STSRRSFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQG 191

HSP 2 Score: 50.8322 bits (120), Expect = 1.772e-69
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLRTL 708
            ++ K+GVIQHSTINNL IGRSVDET+RTL
Sbjct:  199 IIDKEGVIQHSTINNLGIGRSVDETMRTL 227

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: BAS1A_ARATH (2-Cys peroxiredoxin BAS1, chloroplastic OS=Arabidopsis thaliana GN=BAS1 PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 1.772e-69
Identity = 119/149 (79.87%), Postives = 128/149 (85.91%), Query Frame = 2

Query:  152 LQSQVPRPVSLSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            L+S   R  SLS  S SR+SF VKA  +  PLVGN APDF AEAVFDQEFI VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR++EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPLI+D+TKSISKS+GVLI   G
Sbjct:   45 LRSGFARRSSLS--STSRRSFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQG 191

HSP 2 Score: 50.8322 bits (120), Expect = 1.772e-69
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLRTL 708
            ++ K+GVIQHSTINNL IGRSVDET+RTL
Sbjct:  199 IIDKEGVIQHSTINNLGIGRSVDETMRTL 227

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: BAS1_WHEAT (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Triticum aestivum GN=TSA PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 6.701e-69
Identity = 112/132 (84.85%), Postives = 122/132 (92.42%), Query Frame = 2

Query:  206 KSFVVKASVEIP-PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            +SFV +A+ E   PLVGN APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR+ EFEK+NTEILGVS DSVFSHLAWVQT+RKSGGLGDLKYPL++D+TKSISKS+GVLIP  G
Sbjct:    5 RSFVARAAAEYDLPLVGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDVTKSISKSFGVLIPDQG 136

HSP 2 Score: 51.6026 bits (122), Expect = 6.701e-69
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLRTL 708
            ++ K+GVIQHSTINNL IGRSVDETLRTL
Sbjct:  144 IIDKEGVIQHSTINNLGIGRSVDETLRTL 172

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: BAS1_HORVU (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare GN=BAS1 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 6.701e-69
Identity = 112/132 (84.85%), Postives = 122/132 (92.42%), Query Frame = 2

Query:  206 KSFVVKASVEIP-PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            +SFV +A+ E   PLVGN APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR+ EFEK+NTEILGVS DSVFSHLAWVQT+RKSGGLGDLKYPL++D+TKSISKS+GVLIP  G
Sbjct:    5 RSFVARAAAEYDLPLVGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDVTKSISKSFGVLIPDQG 136

HSP 2 Score: 51.6026 bits (122), Expect = 6.701e-69
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLRTL 708
            ++ K+GVIQHSTINNL IGRSVDETLRTL
Sbjct:  144 IIDKEGVIQHSTINNLGIGRSVDETLRTL 172

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: YCF42_PORPU (Putative peroxiredoxin ycf42 OS=Porphyra purpurea GN=ycf42 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.331e-50
Identity = 82/115 (71.30%), Postives = 98/115 (85.22%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPG 592
            VG  APDF+A AV+DQEF  +KLSD+   KYVILFFYPLDFTFVCPTEITAFSD+Y++F +LNTEILGVS DS +SHLAW+QTDR+SGGLGDL+YPL++D+ K IS +Y VL  G
Sbjct:   10 VGQIAPDFSATAVYDQEFKTIKLSDF-KNKYVILFFYPLDFTFVCPTEITAFSDKYSDFSELNTEILGVSVDSEYSHLAWLQTDRESGGLGDLEYPLVSDLKKEISIAYNVLNSG 123

HSP 2 Score: 42.3578 bits (98), Expect = 5.331e-50
Identity = 18/29 (62.07%), Postives = 24/29 (82.76%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLRTL 708
            ++  KG+IQ+ST+NNL  GRSV+ETLR L
Sbjct:  132 IIDPKGIIQYSTVNNLEFGRSVEETLRVL 160

HSP 3 Score: 24.6386 bits (52), Expect = 5.331e-50
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3

Query:  597 GIALRGLFIID 629
            G+ALRGLFIID
Sbjct:  124 GVALRGLFIID 134

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: YCF42_PORYE (Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.409e-49
Identity = 78/112 (69.64%), Postives = 94/112 (83.93%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVL 583
            VG  APDF+A AV+DQEF  +KLSD +  KY++LFFYPLDFTFVCPTEITAFSD+Y  F +LNTE+LGVS DS +SHLAW+QTDR+SGGLGDL YPL++D+ K IS +Y VL
Sbjct:   10 VGQLAPDFSATAVYDQEFKTLKLSD-LKNKYIVLFFYPLDFTFVCPTEITAFSDKYNAFSELNTEVLGVSVDSEYSHLAWLQTDRESGGLGDLSYPLVSDLKKEISAAYNVL 120

HSP 2 Score: 42.743 bits (99), Expect = 7.409e-49
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLRTL 708
            ++  KG+IQ+STINNL  GRSV+ETLR L
Sbjct:  132 IIDPKGIIQYSTINNLEFGRSVEETLRVL 160

HSP 3 Score: 24.6386 bits (52), Expect = 7.409e-49
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 3

Query:  597 GIALRGLFIID 629
            G+ALRGLFIID
Sbjct:  124 GVALRGLFIID 134

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: Y755_SYNY3 (Putative peroxiredoxin sll0755 OS=Synechocystis sp. (strain PCC 6803) GN=sll0755 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.761e-48
Identity = 74/117 (63.25%), Postives = 94/117 (80.34%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            VG  APDF A A+ DQ F  VKLS Y GK Y++LFFYPLDFTFVCPTEI AFSDR++EF  L+TE++G+S DS FSHLAW+QT+RK GG+G++ YPL++D+ K IS++Y VL P +G
Sbjct:    7 VGQPAPDFTATAIVDQSFQTVKLSTYRGK-YLVLFFYPLDFTFVCPTEIIAFSDRHSEFTALDTEVVGISVDSEFSHLAWIQTERKMGGIGNINYPLVSDLKKEISQAYNVLEPDAG 122

HSP 2 Score: 42.3578 bits (98), Expect = 2.761e-48
Identity = 16/29 (55.17%), Postives = 26/29 (89.66%), Query Frame = 1

Query:  622 LLTKKGVIQHSTINNLAIGRSVDETLRTL 708
            ++ ++G++Q++T+NNL+ GRSVDETLR L
Sbjct:  130 IIDREGILQYATVNNLSFGRSVDETLRVL 158

HSP 3 Score: 29.6462 bits (65), Expect = 2.761e-48
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3

Query:  591 DQGIALRGLFIIDKE 635
            D GIALRGLFIID+E
Sbjct:  120 DAGIALRGLFIIDRE 134

[Close]

BLAST of CF417915 vs. ExPASy Swiss-Prot
Match: PRDX2_BOVIN (Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.919e-43
Identity = 77/117 (65.81%), Postives = 86/117 (73.50%), Query Frame = 2

Query:  248 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPGSG 598
            VG  AP+F A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFSDR  EF KLN E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+T+ +S  YGVL    G
Sbjct:    9 VGKPAPEFQATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIVAFSDRAAEFHKLNCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRKLSSDYGVLKEDEG 124

HSP 2 Score: 34.2686 bits (77), Expect = 2.919e-43
Identity = 15/23 (65.22%), Postives = 19/23 (82.61%), Query Frame = 1

Query:  634 KGVIQHSTINNLAIGRSVDETLR 702
            KGV++  TIN+L +GRSVDE LR
Sbjct:  136 KGVLRQVTINDLPVGRSVDEALR 158

HSP 3 Score: 25.7942 bits (55), Expect = 2.919e-43
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  591 DQGIALRGLFIID 629
            D+GIA RGLF+ID
Sbjct:  122 DEGIAYRGLFVID 134

The following BLAST results are available for this feature:

BLAST of CF417915 vs. ExPASy Swiss-Prot

BLAST of CF417915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127


Match Name	E-value	Identity	Description
BAS1_ORYSJ	4.307e-71	77.50	2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza s...	[more]
BAS1B_ARATH	1.772e-69	83.70	2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Ar...	[more]
BAS1_SPIOL	1.772e-69	79.87	2-Cys peroxiredoxin BAS1, chloroplastic OS=Spinaci...	[more]
BAS1A_ARATH	1.772e-69	79.87	2-Cys peroxiredoxin BAS1, chloroplastic OS=Arabido...	[more]
BAS1_WHEAT	6.701e-69	84.85	2-Cys peroxiredoxin BAS1, chloroplastic (Fragment)...	[more]
BAS1_HORVU	6.701e-69	84.85	2-Cys peroxiredoxin BAS1, chloroplastic (Fragment)...	[more]
YCF42_PORPU	5.331e-50	71.30	Putative peroxiredoxin ycf42 OS=Porphyra purpurea ...	[more]
YCF42_PORYE	7.409e-49	69.64	Putative peroxiredoxin ycf42 OS=Porphyra yezoensis...	[more]
Y755_SYNY3	2.761e-48	63.25	Putative peroxiredoxin sll0755 OS=Synechocystis sp...	[more]
PRDX2_BOVIN	2.919e-43	65.81	Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-845 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_E12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417915 ID=CF417915; Name=CF417915; organism=Citrus sinensis; type=EST; length=708bp
AACAAAAACAATGGCTTGCTCAGCTGCTTCTGCTGCTGCCACGGCAACAG
CCGCTCTCATTTCCTCTAACCCCAAGGCTTTCTCTTCTTCCTCAATCTCC
CCTTCTCAAAACCTAACCATTCCCCGCTCCTTCTCCGGCCTCCGCAATCC
CCTCCAGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCCCGCGGGTCCCGTT
CTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAATACCACCATTGGTG
GGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTTTCGATCAAGAGTT
CATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAATATGTGATTCTCT
TTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCACAGAAATCACTGCT
TTCAGCGACCGATATACTGAATTTGAGAAGCTAAACACAGAGATATTGGG
TGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGGGTCCAAACAGACA
GAAAGTCAGGTGGTCTTGGTGATTTGAAGTACCCACTAATTGCTGATATC
ACCAAATCAATTTCAAAATCCTATGGTGTTCTGATCCCTGGATCAGGGAA
TTGCATTGAGAGGACTCTTTATTATTGACAAAGAAAGGAGTCATCCAGCA
CTCAACCATTAACAACCTTGCCATTGGTAGGAGTGTTGACGAAACACTGA
GAACACTT