CF417922

Overview
NameCF417922
Unique NameCF417922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5312 contig Csv1_Contig5312:19..527. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417922 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.839e-17
Identity = 39/56 (69.64%), Postives = 51/56 (91.07%), Query Frame = 3 
Query:   54 LRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLE-QMGCR 218
            LR+EQ+  +++IE EYREQ+ GLRRDAEAK+QKLA+QW+++H+RLTKFLE QMGCR
Sbjct:  308 LREEQKNAMEKIEGEYREQLVGLRRDAEAKDQKLADQWTSRHIRLTKFLEQQMGCR 363
[Close]
BLAST of CF417922 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.990e-16
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 3 
Query:   54 LRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQM-GCR 218
            LR+EQ A ++R+EAEYRE++AGLRRDAEAKEQK+AEQW+AKH RL KFL+Q+  CR
Sbjct:  268 LREEQAAAVERVEAEYREKMAGLRRDAEAKEQKMAEQWAAKHARLAKFLDQVAACR 323
[Close]
BLAST of CF417922 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.743e-12
Identity = 31/53 (58.49%), Postives = 44/53 (83.02%), Query Frame = 3 
Query:   54 LRDEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMG 212
            +R EQ A  +R+E ++RE++A LRRDA+ KE+K+AEQW+AKH R+ KF+EQMG
Sbjct:  304 MRLEQAAAAERVERDHREKVAELRRDAQVKEEKMAEQWAAKHARVAKFVEQMG 356
The following BLAST results are available for this feature:
BLAST of CF417922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AS1_ARATH6.839e-1769.64Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
RS2_ORYSJ1.990e-1671.43Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
RS2_MAIZE1.743e-1258.49Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-852 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-011_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417922 ID=CF417922; Name=CF417922; organism=Citrus sinensis; type=EST; length=509bp
AAGCATGCCGGAGGAGGGAGAAAATGGAGGAGATAGAGGCTAAGATGAAA
GCTCTTAGGGATGAGCAGAGGGCTACTTTGGATAGGATCGAAGCAGAATA
CAGGGAACAGATTGCTGGACTAAGAAGGGATGCTGAAGCCAAGGAGCAGA
AACTGGCTGAGCAATGGTCTGCAAAGCACTTGCGTCTTACCAAGTTTCTT
GAGCAGATGGGGTGCAGGCCGAGGCTCTCTGAGTCCAATGGCCGTTGAGG
ACATCAGTAATACACAATTGGCAATGCTGTACGTGGTCTGGCCTTTTGGT
TTGAATTTTGTGTCGTTAAAGTAATCTTCTATGTCTGAACAGGTTCCCAC
TGGCAGTATGCCTGGAATTCTGCTATAGATATTTATCTATAATTACTGTA
ATGGTGTTTACTACTTGCTTGAACTGGTTGAAATGCAAGCTCGATGGTGT
TACCTAAACCTGTTCTATTTTGCCTTCTACTGCAAGAAATATACAGGTAG
CGTCATGAA
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