CF417952

Overview
NameCF417952
Unique NameCF417952
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417952_ssr194 microsatellite CF417952_ssr194:194..208. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:64..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417952 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.158e-41
Identity = 95/167 (56.89%), Postives = 114/167 (68.26%), Query Frame = 1
Query:  103 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNWEVCYAGPCCFGF 579
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WN  +   G     F
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAF 186          
BLAST of CF417952 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.916e-28
Identity = 59/115 (51.30%), Postives = 76/115 (66.09%), Query Frame = 1
Query:  223 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNWEVCYAG 561
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWN      G
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLG 213          

HSP 2 Score: 35.8094 bits (81), Expect = 4.916e-28
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 2
Query:  542 GRFAMLGLVALAFTEFVKGGTLV 610
            GRFAMLGLVALA TEF+ G   V
Sbjct:  207 GRFAMLGLVALAATEFITGAPFV 229          
BLAST of CF417952 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.424e-27
Identity = 72/173 (41.62%), Postives = 95/173 (54.91%), Query Frame = 1
Query:   46 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNWEVCYAG 561
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWN      G
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLG 154          

HSP 2 Score: 33.113 bits (74), Expect = 1.424e-27
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 2
Query:  542 GRFAMLGLVALAFTEFVKGGTLV 610
            GRFAMLGLVALA TE + G   +
Sbjct:  148 GRFAMLGLVALAATEIITGAPFI 170          
BLAST of CF417952 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.145e-27
Identity = 55/105 (52.38%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  250 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNWEVCYAG 561
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWN      G
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIG 149          

HSP 2 Score: 31.5722 bits (70), Expect = 3.145e-27
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  542 GRFAMLGLVALAFTEFVKG 598
            GRFAM+GLVALA TE + G
Sbjct:  143 GRFAMIGLVALAATEIITG 161          
BLAST of CF417952 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.062e-26
Identity = 74/188 (39.36%), Postives = 106/188 (56.38%), Query Frame = 1
Query:   34 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNWEVCYAGPCCFGF 579
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WN      G     F
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAF 187          
BLAST of CF417952 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.222e-14
Identity = 53/116 (45.69%), Postives = 61/116 (52.59%), Query Frame = 1
Query:  226 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNWEVCYAG 561
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ N      G
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIG 156          

HSP 2 Score: 23.0978 bits (48), Expect = 7.222e-14
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  542 GRFAMLGLVALAFTEFVKG 598
            GRFAM+G  A+   E ++G
Sbjct:  150 GRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CF417952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.158e-4156.89Early light-induced protein, chloroplastic OS=Pisu... [more]
ELI5_HORVU4.916e-2851.30High molecular mass early light-inducible protein ... [more]
ELI9_HORVU1.424e-2741.62Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU3.145e-2752.38Low molecular mass early light-inducible protein H... [more]
DS22_CRAPL3.062e-2639.36Desiccation stress protein DSP-22, chloroplastic O... [more]
CBR_DUNBA7.222e-1445.69Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-882 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417952 ID=CF417952; Name=CF417952; organism=Citrus sinensis; type=EST; length=685bp
ACTTTGTTCTGTTTTCTACTTCATAAATTAAAAATGGCCGCATCACTTGC
TACTCAATCTATGCTGGCAAGTCCTGTAGCAGCTCGTGTGACTGGTATCA
GGAGATCCGGGGCAAACCAACTTTCCTCCGTCAAGTACTTGCCTAGTCTG
CGTAGAAATGTCAACTTATCCGTGCGCTGCACGGCAGAGGATGAGCAGCA
GCAGCAGCAGAAAGATGATCAACCAACCATACCGAAAGCTGAGCCTCAGC
CACCAAAGAAGCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTTGCGTTC
AGCGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTT
CGTGGCTGCATTGGGGGTGGAGATATCCAAGGGTCAGGATGTGTTTGCCC
AGTTATCAGACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTTTTGCTC
ACGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAA
ATCGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGAATTGGGAGGTTT
GCTATGCTGGGCCTTGTTGCTTTGGCTTTCACCGAGTTTGTTAAGGGTGG
CACCCTTGTTTAAGCTTAATTTTGTTTAGATCTGTAGATCTGTATTTTTT
TTAACTAATTAATGTATGAGATCCTACTGTAATTA
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