CF417972

Overview
NameCF417972
Unique NameCF417972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig495 contig Csv1_Contig495:1..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417972 vs. ExPASy Swiss-Prot
Match: SPA2_ARATH (Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2)

HSP 1 Score: 319.701 bits (818), Expect = 9.285e-87
Identity = 149/180 (82.78%), Postives = 166/180 (92.22%), Query Frame = 1
Query:    1 IANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGSSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV 540
            IANVCCVQFS  SSHLLAFGS+D+RTYCYDLRN R PWC+L+GH KAVSY KFLD+ TLVTASTDN LKLWDLK+T+H G STNACSLTF GHTNEKNFVGLST+DGYIACGSE+NEVYAYHRSLPMPITSYKFGSIDPISGKE ++DN LFVSSVCWR+RS+MVV+A+S+G IKVLQ+V
Sbjct:  857 IANVCCVQFSPQSSHLLAFGSSDFRTYCYDLRNLRTPWCILSGHNKAVSYAKFLDNETLVTASTDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNFVGLSTSDGYIACGSETNEVYAYHRSLPMPITSYKFGSIDPISGKEIEEDNNLFVSSVCWRKRSNMVVSASSNGSIKVLQLV 1036          
BLAST of CF417972 vs. ExPASy Swiss-Prot
Match: SPA1_ARATH (Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.910e-77
Identity = 130/179 (72.63%), Postives = 159/179 (88.83%), Query Frame = 1
Query:    4 ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGSSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV 540
            ANVCCVQFS++S+HLLAFGSADY+ YCYDLR  + PWC LAGHEKAVSYVKF+DS T+V+ASTDN LKLW+L +T+ +G S  ACSLT+ GHTN+KNFVGLS  DGYIACGSE+NEVY+Y++SLPMP+TSYKFGS+DPISG E  DDNG FVSSVCWR++S+M+VAANS+G +K+L++V
Sbjct:  851 ANVCCVQFSSYSNHLLAFGSADYKVYCYDLRYVKTPWCTLAGHEKAVSYVKFMDSETIVSASTDNSLKLWNLNKTNSSGLSPGACSLTYKGHTNQKNFVGLSVLDGYIACGSETNEVYSYYKSLPMPMTSYKFGSVDPISGNEYFDDNGQFVSSVCWRKKSNMLVAANSTGNMKLLKLV 1029          
BLAST of CF417972 vs. ExPASy Swiss-Prot
Match: SPA4_ARATH (Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.446e-55
Identity = 107/180 (59.44%), Postives = 135/180 (75.00%), Query Frame = 1
Query:    4 ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGSSTNACSL-TFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV 540
            AN+CCVQF + +   LAFGSAD++ Y YDLRN + P C + GH K VSYV+F+DS TLV++STDN LKLWDL   S + S  N   L +F GHTN KNFVGLS +DGYIA GSE+NEV+ YH++ PMP+ SYKF +IDP+S  E DD +  F+SSVCWR +S  +VAANS+G IK+L+MV
Sbjct:  619 ANICCVQFPSETGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHHKTVSYVRFVDSSTLVSSSTDNTLKLWDL---SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELEVDDAS-QFISSVCWRGQSSTLVAANSTGNIKILEMV 794          
BLAST of CF417972 vs. ExPASy Swiss-Prot
Match: SPA3_ARATH (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.207e-55
Identity = 106/180 (58.89%), Postives = 134/180 (74.44%), Query Frame = 1
Query:    4 ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGSSTNACSL-TFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVLQMV 540
            ANVCCVQF + S   LAFGSAD++ Y YDLRN + P C + GH K VSYVKF+DS TLV++STDN LKLWDL   S + S  N   L +F+GHTN KNFVGLS +DGYIA GSE+NEV+ YH++ PMP+ SY F + D +SG E DD +  F+SS+CWR +S  +VAANS+G IK+L+M+
Sbjct:  669 ANVCCVQFPSDSGRSLAFGSADHKVYYYDLRNPKIPLCTMIGHSKTVSYVKFVDSSTLVSSSTDNTLKLWDL---SMSASGINESPLHSFTGHTNLKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGLEVDDAS-QFISSICWRGQSSTLVAANSNGNIKILEMM 844          
BLAST of CF417972 vs. ExPASy Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 88/176 (50.00%), Postives = 118/176 (67.05%), Query Frame = 1
Query:    4 ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGSSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVL 531
            AN+CCV+++  SS+ +A GSAD+  + YDLRN   P  V +GH+KAVSYVKFL +  L +ASTD+ L+LWD+K         N    TF GHTNEKNFVGL+    Y+ACGSE+NEVY YH+ +  P+TS++FGS D    +E  +    F+S+VCW+  S  ++ ANS G IKVL
Sbjct:  506 ANICCVKYNPGSSNYIAVGSADHHIHYYDLRNISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVK--------DNLPVRTFRGHTNEKNFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEE--EAGSYFISAVCWKSDSPTMLTANSQGTIKVL 671          
BLAST of CF417972 vs. ExPASy Swiss-Prot
Match: RFWD2_MOUSE (E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 9.098e-42
Identity = 87/184 (47.28%), Postives = 121/184 (65.76%), Query Frame = 1
Query:    4 ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGSSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKE-TDDDNGLFVSSVCWRRRSD----MVVAANSSGCIKVLQMV 540
            ANVCCV+FS  S + LAFG AD+  + YDLRN + P  V  GH KAVSY KF+    +V+ASTD++LKLW++ +          C  +F GH NEKNFVGL++   YIACGSE+N +Y Y++ L   + ++KF ++  +  K+  +DD   FVS+VCWR  SD    +++AANS G IKVL++V
Sbjct:  558 ANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKP--------YCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALSDGESNVLIAANSQGTIKVLELV 733          
BLAST of CF417972 vs. ExPASy Swiss-Prot
Match: COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.552e-41
Identity = 83/176 (47.16%), Postives = 115/176 (65.34%), Query Frame = 1
Query:    4 ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGSSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKETDDDNGLFVSSVCWRRRSDMVVAANSSGCIKVL 531
            AN+CCV+++  S + +A GSAD+  + YDLRN   P  V  GH+KAVSYVKFL +  L +ASTD+ L+LWD+K+        N    TF GH NEKNFVGL+    YIACGSE+NEV+ YH+ +  P+T ++FG++D    +  D+    F+S+VCW+     ++ ANS G IKVL
Sbjct:  503 ANICCVKYNPGSGNYIAVGSADHHIHYYDLRNISRPVHVFTGHKKAVSYVKFLSNDELASASTDSTLRLWDVKQ--------NLPVRTFRGHANEKNFVGLTVRSEYIACGSETNEVFVYHKEISKPLTWHRFGTLDMEDAE--DEAGSYFISAVCWKSDRPTILTANSQGTIKVL 668          
BLAST of CF417972 vs. ExPASy Swiss-Prot
Match: RFWD2_HUMAN (E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 86/184 (46.74%), Postives = 121/184 (65.76%), Query Frame = 1
Query:    4 ANVCCVQFSAHSSHLLAFGSADYRTYCYDLRNARAPWCVLAGHEKAVSYVKFLDSGTLVTASTDNKLKLWDLKRTSHTGSSTNACSLTFSGHTNEKNFVGLSTADGYIACGSESNEVYAYHRSLPMPITSYKFGSIDPISGKE-TDDDNGLFVSSVCWRR----RSDMVVAANSSGCIKVLQMV 540
            ANVCCV+FS  S + LAFG AD+  + YDLRN + P  V  GH KAVSY KF+    +V+ASTD++LKLW++ +          C  +F GH NEKNFVGL++   YIACGSE+N +Y Y++ L   + ++KF ++  +  K+  +DD   FVS+VCWR      S++++AANS G IKVL++V
Sbjct:  556 ANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKP--------YCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV 731          
The following BLAST results are available for this feature:
BLAST of CF417972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SPA2_ARATH9.285e-8782.78Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=... [more]
SPA1_ARATH3.910e-7772.63Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis th... [more]
SPA4_ARATH1.446e-5559.44Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=... [more]
SPA3_ARATH4.207e-5558.89Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=... [more]
COP1_ARATH9.721e-4450.00E3 ubiquitin-protein ligase COP1 OS=Arabidopsis th... [more]
RFWD2_MOUSE9.098e-4247.28E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus ... [more]
COP1_PEA1.552e-4147.16E3 ubiquitin-protein ligase COP1 OS=Pisum sativum ... [more]
RFWD2_HUMAN2.027e-4146.74E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-902 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417972 ID=CF417972; Name=CF417972; organism=Citrus sinensis; type=EST; length=693bp
ATTGCAAATGTCTGCTGTGTCCAGTTCTCTGCTCACTCATCTCATTTGCT
GGCCTTTGGTTCTGCGGATTACAGAACATATTGCTATGATCTTCGGAATG
CCAGAGCTCCCTGGTGTGTATTGGCTGGCCATGAAAAAGCTGTGAGCTAT
GTCAAATTCTTGGATTCTGGAACTCTTGTTACTGCATCCACCGACAATAA
ATTGAAGCTTTGGGATCTCAAAAGAACCAGTCACACTGGGTCATCTACCA
ATGCTTGCTCCTTAACCTTTAGTGGGCATACCAACGAGAAGAACTTCGTG
GGGTTGTCTACTGCTGATGGTTATATAGCATGTGGTTCAGAATCGAATGA
GGTTTATGCTTACCATAGGTCTCTGCCCATGCCAATCACTTCCTACAAGT
TTGGCTCCATTGACCCTATTTCCGGTAAAGAGACTGACGATGACAACGGT
CTGTTTGTTTCAAGTGTCTGTTGGAGACGGAGATCAGACATGGTTGTTGC
TGCCAATTCGAGTGGGTGTATAAAAGTGCTGCAAATGGTTTAATTTGTGT
TGAGCCTCTGAAACAGATAAAAGAATAGCTGTCTTCTGGCTTCTGACAAC
TTGAGCTCTTCTCTTTCCTTCAGCCGAATCAAAGAAGTTTGGGCGCAAAA
ACCCTAAGTGTCCAGAGATATGTTTGGTTTGGGCAATGTATTT
back to top