CF417974

Overview
NameCF417974
Unique NameCF417974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417974_ssr622 microsatellite CF417974_ssr622:622..633. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11180 contig Csv1_Contig11180:383..1090. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP83_ARATH (Heat shock protein 81-3 OS=Arabidopsis thaliana GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 370.548 bits (950), Expect = 3.573e-102
Identity = 183/195 (93.85%), Postives = 192/195 (98.46%), Query Frame = 3 
Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LFDT+KKPNNIKLYVRRVFIMDNCE++IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKC+ELF EIAENKEDYNKFYE+FSKNLKLGIHEDS N+TK+AELLRYHSTKSGDELTSLKDYVTRMKEGQNDI+YITGESKKAVENSPFLEKLKKKG EVLYMVDAIDEYA+GQLKEFEGKKLVSAT
Sbjct:  322 LFDTKKKPNNIKLYVRRVFIMDNCEDIIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRTKIAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIFYITGESKKAVENSPFLEKLKKKGIEVLYMVDAIDEYAIGQLKEFEGKKLVSAT 516

HSP 2 Score: 22.7126 bits (47), Expect = 3.573e-102
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  679 RDVLGDKVEK 708
            +DVLGDKVEK
Sbjct:  547 KDVLGDKVEK 556
[Close]
BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP82_ARATH (Heat shock protein 81-2 OS=Arabidopsis thaliana GN=HSP81-2 PE=1 SV=1)

HSP 1 Score: 370.548 bits (950), Expect = 3.573e-102
Identity = 183/195 (93.85%), Postives = 192/195 (98.46%), Query Frame = 3 
Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LFDT+KKPNNIKLYVRRVFIMDNCE++IPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKC+ELF EIAENKEDYNKFYE+FSKNLKLGIHEDS N+TK+AELLRYHSTKSGDELTSLKDYVTRMKEGQNDI+YITGESKKAVENSPFLEKLKKKG EVLYMVDAIDEYA+GQLKEFEGKKLVSAT
Sbjct:  322 LFDTKKKPNNIKLYVRRVFIMDNCEDIIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRTKIAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIFYITGESKKAVENSPFLEKLKKKGIEVLYMVDAIDEYAIGQLKEFEGKKLVSAT 516

HSP 2 Score: 22.7126 bits (47), Expect = 3.573e-102
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  679 RDVLGDKVEK 708
            +DVLGDKVEK
Sbjct:  547 KDVLGDKVEK 556
[Close]
BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP80_SOLLC (Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 7.934e-102
Identity = 182/195 (93.33%), Postives = 190/195 (97.44%), Query Frame = 3 
Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LFDT+KKPNNIKLYVRRVFIMDNC+ELIPEYL FVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKC+ELF EIAENKEDYNKFYE+FSKNLKLGIHEDS N+ K AELLRYHSTKSGDE+TSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEY++GQLKEFEGKKLVSAT
Sbjct:  322 LFDTKKKPNNIKLYVRRVFIMDNCDELIPEYLSFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRAKFAELLRYHSTKSGDEMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYSIGQLKEFEGKKLVSAT 516

HSP 2 Score: 22.7126 bits (47), Expect = 7.934e-102
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  679 RDVLGDKVEK 708
            +DVLGDKVEK
Sbjct:  547 KDVLGDKVEK 556
[Close]
BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSJ (Heat shock protein 81-1 OS=Oryza sativa subsp. japonica GN=HSP81-1 PE=2 SV=2)

HSP 1 Score: 369.007 bits (946), Expect = 1.380e-101
Identity = 185/195 (94.87%), Postives = 190/195 (97.44%), Query Frame = 3 
Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LFDTRKK NNIKLYVRRVFIMDNCEELIPE+L FVKGIVDSEDLPLNISRE LQQNKILKVIRKNLVKKC+ELF EIAENKEDYNKFYE+FSKNLKLGIHEDSTN+ K+AELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT
Sbjct:  324 LFDTRKKLNNIKLYVRRVFIMDNCEELIPEWLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSTNRNKIAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 518
[Close]
BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSI (Heat shock protein 81-1 OS=Oryza sativa subsp. indica GN=HSP81-1 PE=2 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.380e-101
Identity = 185/195 (94.87%), Postives = 190/195 (97.44%), Query Frame = 3 
Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LFDTRKK NNIKLYVRRVFIMDNCEELIPE+L FVKGIVDSEDLPLNISRE LQQNKILKVIRKNLVKKC+ELF EIAENKEDYNKFYE+FSKNLKLGIHEDSTN+ K+AELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT
Sbjct:  324 LFDTRKKLNNIKLYVRRVFIMDNCEELIPEWLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSTNRNKIAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 518
[Close]
BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP83_ORYSJ (Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 368.237 bits (944), Expect = 2.354e-101
Identity = 184/195 (94.36%), Postives = 191/195 (97.95%), Query Frame = 3 
Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LFDTRKK NNIKLYVRRVFIMDNCEELIPE+L FVKGIVDSEDLPLNISRE LQQNKILKVIRKNLVKKC+ELF EIAENKEDYNKFYE+FSKNLKLGIHEDSTN+TK+AELLRYHSTKSGDELTSLKDYVTRMKEGQ++IYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT
Sbjct:  324 LFDTRKKQNNIKLYVRRVFIMDNCEELIPEWLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSTNRTKIAELLRYHSTKSGDELTSLKDYVTRMKEGQSEIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 518
[Close]
BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP82_ORYSJ (Heat shock protein 81-2 OS=Oryza sativa subsp. japonica GN=HSP81-2 PE=2 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.354e-101
Identity = 184/195 (94.36%), Postives = 191/195 (97.95%), Query Frame = 3 
Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LFDTRKK NNIKLYVRRVFIMDNCEELIPE+L FVKGIVDSEDLPLNISRE LQQNKILKVIRKNLVKKC+ELF EIAENKEDYNKFYE+FSKNLKLGIHEDSTN+TK+AELLRYHSTKSGDELTSLKDYVTRMKEGQ++IYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT
Sbjct:  324 LFDTRKKQNNIKLYVRRVFIMDNCEELIPEWLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSTNRTKIAELLRYHSTKSGDELTSLKDYVTRMKEGQSEIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 518
[Close]
BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP82_TOBAC (Heat shock protein 82 (Fragment) OS=Nicotiana tabacum GN=HSP82 PE=2 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 5.600e-100
Identity = 179/195 (91.79%), Postives = 189/195 (96.92%), Query Frame = 3 
Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LFDTRKK NNIKLYVRRVFIMDNCEELIPEYLGFVKG+VDS+DLPLNISRE LQQNKILKVIRKNLVKKCIE+F EIAENKEDYNKFYE+FSKNLKLGIHEDS N+ KLA+LLRYHSTKSGDE+TSLKDYVTRMKEGQ DIYYITGESKKAVENSPFLE+LKKKGYEVLYMVDAIDEYAVGQLKE++GKKLVSAT
Sbjct:  123 LFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYDGKKLVSAT 317

HSP 2 Score: 22.3274 bits (46), Expect = 5.600e-100
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  679 RDVLGDKVEK 708
            +D+LGDKVEK
Sbjct:  349 KDILGDKVEK 358
[Close]
BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP83_IPONI (Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.042e-98
Identity = 177/195 (90.77%), Postives = 189/195 (96.92%), Query Frame = 3 
Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LFDTRKK NNIKLYVRRVFIMDNCEELIPEYLGFVKG+VDS+DLPLNISRE LQQNKILKVIRKNLVKKCIE+F EIAENK+DYNKFYE+FSKNLKLGIHEDS N+ KLA+LLRY+STKSGDELTSLKDYVTRMKEGQ DIYYITGESKKAVENSPFLE+LKKKGYEVL+MVDAIDEYAVGQLKE++GKKLVSAT
Sbjct:  327 LFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKDDYNKFYEAFSKNLKLGIHEDSQNRAKLADLLRYYSTKSGDELTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSAT 521

HSP 2 Score: 22.3274 bits (46), Expect = 1.042e-98
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  679 RDVLGDKVEK 708
            +D+LGDKVEK
Sbjct:  553 KDILGDKVEK 562
[Close]
BLAST of CF417974 vs. ExPASy Swiss-Prot
Match: HSP81_ARATH (Heat shock protein 81-1 OS=Arabidopsis thaliana GN=HSP81-1 PE=1 SV=3)

HSP 1 Score: 355.14 bits (910), Expect = 2.062e-97
Identity = 174/195 (89.23%), Postives = 187/195 (95.90%), Query Frame = 3 
Query:    3 LFDTRKKPNNIKLYVRRVFIMDNCEELIPEYLGFVKGIVDSEDLPLNISRETLQQNKILKVIRKNLVKKCIELFQEIAENKEDYNKFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 587
            LFDTRKK NNIKLYVRRVFIMDNCEELIPEYL FVKG+VDS+DLPLNISRETLQQNKILKVIRKNLVKKCIE+F EIAENKEDY KFYE+FSKNLKLGIHEDS N+ K+A+LLRYHSTKSGDE+TS KDYVTRMKEGQ DI+YITGESKKAVENSPFLE+LKK+GYEVLYMVDAIDEYAVGQLKE++GKKLVSAT
Sbjct:  323 LFDTRKKLNNIKLYVRRVFIMDNCEELIPEYLSFVKGVVDSDDLPLNISRETLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYTKFYEAFSKNLKLGIHEDSQNRGKIADLLRYHSTKSGDEMTSFKDYVTRMKEGQKDIFYITGESKKAVENSPFLERLKKRGYEVLYMVDAIDEYAVGQLKEYDGKKLVSAT 517
The following BLAST results are available for this feature:
BLAST of CF417974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
HSP83_ARATH3.573e-10293.85Heat shock protein 81-3 OS=Arabidopsis thaliana GN... [more]
HSP82_ARATH3.573e-10293.85Heat shock protein 81-2 OS=Arabidopsis thaliana GN... [more]
HSP80_SOLLC7.934e-10293.33Heat shock cognate protein 80 OS=Solanum lycopersi... [more]
HSP81_ORYSJ1.380e-10194.87Heat shock protein 81-1 OS=Oryza sativa subsp. jap... [more]
HSP81_ORYSI1.380e-10194.87Heat shock protein 81-1 OS=Oryza sativa subsp. ind... [more]
HSP83_ORYSJ2.354e-10194.36Heat shock protein 81-3 OS=Oryza sativa subsp. jap... [more]
HSP82_ORYSJ2.354e-10194.36Heat shock protein 81-2 OS=Oryza sativa subsp. jap... [more]
HSP82_TOBAC5.600e-10091.79Heat shock protein 82 (Fragment) OS=Nicotiana taba... [more]
HSP83_IPONI1.042e-9890.77Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=... [more]
HSP81_ARATH2.062e-9789.23Heat shock protein 81-1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-904 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417974 ID=CF417974; Name=CF417974; organism=Citrus sinensis; type=EST; length=709bp
ATCTCTTTGACACAAGGAAGAAGCCCAATAATATCAAGCTCTACGTCCGC
CGTGTCTTCATCATGGACAACTGTGAGGAGTTGATCCCCGAATACCTTGG
TTTTGTTAAGGGTATTGTTGATTCCGAGGATCTCCCTCTTAACATCTCAA
GAGAAACACTCCAGCAGAACAAGATCTTGAAGGTCATCCGCAAGAACTTG
GTGAAGAAGTGCATTGAGCTCTTCCAAGAGATTGCTGAGAACAAGGAAGA
TTACAACAAGTTTTATGAGTCATTCTCTAAGAACCTAAAGCTTGGTATCC
ATGAGGACTCCACCAACAAGACCAAGCTTGCTGAGCTGCTCCGATACCAT
TCCACCAAGAGTGGTGATGAGTTGACTAGCTTGAAGGATTATGTGACCAG
AATGAAGGAAGGCCAGAATGATATCTACTACATCACTGGTGAGAGCAAGA
AGGCTGTTGAGAACTCCCCATTTCTTGAGAAGCTCAAGAAGAAGGGCTAT
GAAGTGCTCTACATGGTTGATGCCATAGATGAGTACGCTGTTGGTCAGCT
CAAGGAGTTTGAGGGAAAGAAGCTTGTCTCAGCAACCAAAGAAGGTCTCA
AGCTTGACGAGAGTGAAGATGAGAAGAAGAAGAAGGNAACCTTGAAGGAG
AAATTTGAGGGTCTCTGCAAGTGGATCAAGGGATGTTTTGGGTGACAAGG
TCGAAAAAG
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