CF418025

Overview
NameCF418025
Unique NameCF418025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7030 contig Csv1_Contig7030:47..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF418025 vs. ExPASy Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 269.626 bits (688), Expect = 1.065e-71
Identity = 129/168 (76.79%), Postives = 146/168 (86.90%), Query Frame = 3 
Query:   57 MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXXIAEVQELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 560
            MSGAGKKIADVAFKA RTIDW+GMAK+LV+DEAR+EF+ LRRAFDEVN+ LQTKFSQEPEPIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELKEA              IA+VQE+ +K+STMTA+EYFEKHPELKKKFDDEIRND WGY
Sbjct:    1 MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168
The following BLAST results are available for this feature:
BLAST of CF418025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP5H_ARATH1.065e-7176.79ATP synthase subunit d, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-955 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418025 ID=CF418025; Name=CF418025; organism=Citrus sinensis; type=EST; length=685bp
TGAGAAAATCAAAAAATTAAGAGAAAAGAAAAAGGGAAAATCAGTCGAGA
GAGAAAATGAGCGGAGCTGGCAAGAAAATAGCTGACGTCGCATTCAAGGC
CGGAAGGACCATAGATTGGGAAGGGATGGCGAAGATGCTGGTCTCCGATG
AGGCACGCAAGGAGTTCGCCACTCTCCGTCGCGCTTTCGACGAAGTCAAC
TCCACTCTTCAGACCAAGTTCAGCCAGGAACCTGAACCTATTGACTGGGA
GTATTACAGAAAAGGAATTGGCTCTCGCTTGGTGGACATGTACAAACAGG
CTTATGAAAGCATAGAGGTCCCAAAGTATGTAGACAAAGTCACCCCTGAA
TACAAATCTAAGTTTGATGCTTTGCTGGTGGAATTGAAAGAAGCAGAAGG
GAAATCTCTTAAGGAGTCCGAGCGTTTGGAGAAAGAAATAGCTGAGGTTC
AAGAACTGAAGGAAAAGATCAGCACCATGACCGCTGAGGAATACTTTGAA
AAGCATCCGGAGCTCAAAAAGAAGTTCGATGATGAAATCAGGAATGACTA
CTGGGGCTATTGATCACACATTTGCTCAATTTAGCAGCTGCATTTCCTAG
CTCGGCCAAGATTTTCTGAAGTTGCCCTGTTTTCCCAGCTTGTTAAATAA
TAATGATCATTCGAATTGTTTTTGCATAAACCTGT
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