CF503827
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503827 vs. ExPASy Swiss-Prot
Match: PRP39_SCHPO (Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe GN=prp39 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 2.086e-20 Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 3 Query: 156 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQ 344 ER + G+ +SVD+W +YC F + T GD +R LF +G VG D+LS P WDKY+E+E Q+ Sbjct: 96 ERGIAGIPHSVDLWTNYCAFKMETNGDANEVRELFMQGANMVGLDFLSHPFWDKYLEFEERQE 158 HSP 2 Score: 43.5134 bits (101), Expect = 2.086e-20 Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = 1 Query: 4 GCRLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 108 G ++ I +R VYD FL ++PL +GYWKKYAD Sbjct: 46 GRNSSKQAINTLRSVYDRFLGKYPLLFGYWKKYAD 80
BLAST of CF503827 vs. ExPASy Swiss-Prot
Match: PRP39_DROME (Pre-mRNA-processing factor 39 OS=Drosophila melanogaster GN=CG1646 PE=1 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 9.736e-16 Identity = 24/64 (37.50%), Postives = 39/64 (60.94%), Query Frame = 3 Query: 144 WKFTERAVQGVTYSVDIWLHYCIFAINTYGDPET-IRRLFERGLAYVGTDYLSFPLWDKYIEYE 332 +K ER ++ + SVD+W+HY + + +GD ET +R +ER + G ++ S LWD YI +E Sbjct: 433 YKVFERGLEAIPLSVDLWIHYLMHVKSNHGDDETFVRSQYERAVKACGLEFRSDKLWDAYIRWE 496 HSP 2 Score: 47.3654 bits (111), Expect = 9.736e-16 Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 1 Query: 40 RRVYDAFLAEFPLCYGYWKKYADHRGTRGL 129 R YD FL+ +P CYGYW+KYAD+ +G+ Sbjct: 399 REAYDTFLSHYPYCYGYWRKYADYEKRKGI 428
BLAST of CF503827 vs. ExPASy Swiss-Prot
Match: PRP39_XENLA (Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 4.735e-15 Identity = 27/66 (40.91%), Postives = 36/66 (54.55%), Query Frame = 3 Query: 159 RAVQGVTYSVDIWLHYCIFAINTY--GDPE---TIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ 341 R +Q +T SVD+W+HY F T DPE T+R FE + G D+ S LW+ YI +E Q Sbjct: 129 RGIQAITLSVDLWMHYLNFLKETLDPADPETSLTLRGTFEHAVVSAGLDFRSDKLWEMYINWETEQ 194 HSP 2 Score: 48.1358 bits (113), Expect = 4.735e-15 Identity = 17/30 (56.67%), Postives = 24/30 (80.00%), Query Frame = 1 Query: 19 QDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 108 ++++ R+ +DAFLA +P CYGYWKKYAD Sbjct: 83 ENHLFAARKAFDAFLAHYPYCYGYWKKYAD 112
BLAST of CF503827 vs. ExPASy Swiss-Prot
Match: PRP39_HUMAN (Pre-mRNA-processing factor 39 OS=Homo sapiens GN=PRPF39 PE=1 SV=3) HSP 1 Score: 53.5286 bits (127), Expect = 3.841e-14 Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 3 Query: 159 RAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ 341 R +Q + SVD+W+HY F T GDPET IR FE + GTD+ S LW+ YI +E Q Sbjct: 154 RGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQ 219 HSP 2 Score: 43.5134 bits (101), Expect = 3.841e-14 Identity = 14/30 (46.67%), Postives = 22/30 (73.33%), Query Frame = 1 Query: 19 QDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 108 +++++ R+ +D F +P CYGYWKKYAD Sbjct: 108 ENHLMAARKAFDRFFIHYPYCYGYWKKYAD 137
BLAST of CF503827 vs. ExPASy Swiss-Prot
Match: PRP39_MOUSE (Pre-mRNA-processing factor 39 OS=Mus musculus GN=Prpf39 PE=2 SV=3) HSP 1 Score: 50.8322 bits (120), Expect = 1.846e-13 Identity = 28/66 (42.42%), Postives = 36/66 (54.55%), Query Frame = 3 Query: 159 RAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ 341 R +Q + SVD+W+HY F T GD ET IR FE + GTD+ S LW+ YI +E Q Sbjct: 152 RGLQAIPLSVDLWIHYINFLKETLEPGDQETNTTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQ 217 HSP 2 Score: 43.8986 bits (102), Expect = 1.846e-13 Identity = 14/30 (46.67%), Postives = 22/30 (73.33%), Query Frame = 1 Query: 19 QDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 108 +++++ R+ +D F +P CYGYWKKYAD Sbjct: 106 ENHLMAARKAFDKFFVHYPYCYGYWKKYAD 135
BLAST of CF503827 vs. ExPASy Swiss-Prot
Match: PRP39_DANRE (Pre-mRNA-processing factor 39 OS=Danio rerio GN=prpf39 PE=2 SV=2) HSP 1 Score: 45.0542 bits (105), Expect = 5.496e-12 Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 3 Query: 159 RAVQGVTYSVDIWLHYCIFAINTY----GDPET-IRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ 341 R +Q + SVD+WLHY F G+ E+ IR +E + GTD+ S LW+ YI +E Q Sbjct: 225 RGLQAIPLSVDLWLHYITFLRENQDTSDGEAESRIRASYEHAVLACGTDFRSDRLWEAYIAWETEQ 290 HSP 2 Score: 44.669 bits (104), Expect = 5.496e-12 Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 1 Query: 19 QDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 108 +++++ R+ +DAF +P CYGYWKKYAD Sbjct: 179 ENHLLGSRKAFDAFFLHYPYCYGYWKKYAD 208 The following BLAST results are available for this feature:
BLAST of CF503827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF503827 ID=CF503827; Name=CF503827; organism=Citrus sinensis; type=EST; length=351bpback to top |