CF503827

Overview
NameCF503827
Unique NameCF503827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503827 vs. ExPASy Swiss-Prot
Match: PRP39_SCHPO (Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe GN=prp39 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.086e-20
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 3
Query:  156 ERAVQGVTYSVDIWLHYCIFAINTYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQ 344
            ER + G+ +SVD+W +YC F + T GD   +R LF +G   VG D+LS P WDKY+E+E  Q+
Sbjct:   96 ERGIAGIPHSVDLWTNYCAFKMETNGDANEVRELFMQGANMVGLDFLSHPFWDKYLEFEERQE 158          

HSP 2 Score: 43.5134 bits (101), Expect = 2.086e-20
Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = 1
Query:    4 GCRLAQDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 108
            G   ++  I  +R VYD FL ++PL +GYWKKYAD
Sbjct:   46 GRNSSKQAINTLRSVYDRFLGKYPLLFGYWKKYAD 80          
BLAST of CF503827 vs. ExPASy Swiss-Prot
Match: PRP39_DROME (Pre-mRNA-processing factor 39 OS=Drosophila melanogaster GN=CG1646 PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 9.736e-16
Identity = 24/64 (37.50%), Postives = 39/64 (60.94%), Query Frame = 3
Query:  144 WKFTERAVQGVTYSVDIWLHYCIFAINTYGDPET-IRRLFERGLAYVGTDYLSFPLWDKYIEYE 332
            +K  ER ++ +  SVD+W+HY +   + +GD ET +R  +ER +   G ++ S  LWD YI +E
Sbjct:  433 YKVFERGLEAIPLSVDLWIHYLMHVKSNHGDDETFVRSQYERAVKACGLEFRSDKLWDAYIRWE 496          

HSP 2 Score: 47.3654 bits (111), Expect = 9.736e-16
Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 1
Query:   40 RRVYDAFLAEFPLCYGYWKKYADHRGTRGL 129
            R  YD FL+ +P CYGYW+KYAD+   +G+
Sbjct:  399 REAYDTFLSHYPYCYGYWRKYADYEKRKGI 428          
BLAST of CF503827 vs. ExPASy Swiss-Prot
Match: PRP39_XENLA (Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 4.735e-15
Identity = 27/66 (40.91%), Postives = 36/66 (54.55%), Query Frame = 3
Query:  159 RAVQGVTYSVDIWLHYCIFAINTY--GDPE---TIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ 341
            R +Q +T SVD+W+HY  F   T    DPE   T+R  FE  +   G D+ S  LW+ YI +E  Q
Sbjct:  129 RGIQAITLSVDLWMHYLNFLKETLDPADPETSLTLRGTFEHAVVSAGLDFRSDKLWEMYINWETEQ 194          

HSP 2 Score: 48.1358 bits (113), Expect = 4.735e-15
Identity = 17/30 (56.67%), Postives = 24/30 (80.00%), Query Frame = 1
Query:   19 QDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 108
            ++++   R+ +DAFLA +P CYGYWKKYAD
Sbjct:   83 ENHLFAARKAFDAFLAHYPYCYGYWKKYAD 112          
BLAST of CF503827 vs. ExPASy Swiss-Prot
Match: PRP39_HUMAN (Pre-mRNA-processing factor 39 OS=Homo sapiens GN=PRPF39 PE=1 SV=3)

HSP 1 Score: 53.5286 bits (127), Expect = 3.841e-14
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 3
Query:  159 RAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ 341
            R +Q +  SVD+W+HY  F   T   GDPET   IR  FE  +   GTD+ S  LW+ YI +E  Q
Sbjct:  154 RGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQ 219          

HSP 2 Score: 43.5134 bits (101), Expect = 3.841e-14
Identity = 14/30 (46.67%), Postives = 22/30 (73.33%), Query Frame = 1
Query:   19 QDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 108
            +++++  R+ +D F   +P CYGYWKKYAD
Sbjct:  108 ENHLMAARKAFDRFFIHYPYCYGYWKKYAD 137          
BLAST of CF503827 vs. ExPASy Swiss-Prot
Match: PRP39_MOUSE (Pre-mRNA-processing factor 39 OS=Mus musculus GN=Prpf39 PE=2 SV=3)

HSP 1 Score: 50.8322 bits (120), Expect = 1.846e-13
Identity = 28/66 (42.42%), Postives = 36/66 (54.55%), Query Frame = 3
Query:  159 RAVQGVTYSVDIWLHYCIFAINTY--GDPET---IRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ 341
            R +Q +  SVD+W+HY  F   T   GD ET   IR  FE  +   GTD+ S  LW+ YI +E  Q
Sbjct:  152 RGLQAIPLSVDLWIHYINFLKETLEPGDQETNTTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQ 217          

HSP 2 Score: 43.8986 bits (102), Expect = 1.846e-13
Identity = 14/30 (46.67%), Postives = 22/30 (73.33%), Query Frame = 1
Query:   19 QDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 108
            +++++  R+ +D F   +P CYGYWKKYAD
Sbjct:  106 ENHLMAARKAFDKFFVHYPYCYGYWKKYAD 135          
BLAST of CF503827 vs. ExPASy Swiss-Prot
Match: PRP39_DANRE (Pre-mRNA-processing factor 39 OS=Danio rerio GN=prpf39 PE=2 SV=2)

HSP 1 Score: 45.0542 bits (105), Expect = 5.496e-12
Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 3
Query:  159 RAVQGVTYSVDIWLHYCIFAINTY----GDPET-IRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQ 341
            R +Q +  SVD+WLHY  F         G+ E+ IR  +E  +   GTD+ S  LW+ YI +E  Q
Sbjct:  225 RGLQAIPLSVDLWLHYITFLRENQDTSDGEAESRIRASYEHAVLACGTDFRSDRLWEAYIAWETEQ 290          

HSP 2 Score: 44.669 bits (104), Expect = 5.496e-12
Identity = 15/30 (50.00%), Postives = 23/30 (76.67%), Query Frame = 1
Query:   19 QDNIVKIRRVYDAFLAEFPLCYGYWKKYAD 108
            +++++  R+ +DAF   +P CYGYWKKYAD
Sbjct:  179 ENHLLGSRKAFDAFFLHYPYCYGYWKKYAD 208          
The following BLAST results are available for this feature:
BLAST of CF503827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PRP39_SCHPO2.086e-2047.62Pre-mRNA-processing factor 39 OS=Schizosaccharomyc... [more]
PRP39_DROME9.736e-1637.50Pre-mRNA-processing factor 39 OS=Drosophila melano... [more]
PRP39_XENLA4.735e-1540.91Pre-mRNA-processing factor 39 OS=Xenopus laevis GN... [more]
PRP39_HUMAN3.841e-1443.94Pre-mRNA-processing factor 39 OS=Homo sapiens GN=P... [more]
PRP39_MOUSE1.846e-1342.42Pre-mRNA-processing factor 39 OS=Mus musculus GN=P... [more]
PRP39_DANRE5.496e-1237.88Pre-mRNA-processing factor 39 OS=Danio rerio GN=pr... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-314 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503827 ID=CF503827; Name=CF503827; organism=Citrus sinensis; type=EST; length=351bp
CCGGGCTGCAGGCTGGCACAGGACAATATAGTAAAAATAAGAAGAGTGTA
TGATGCTTTTCTGGCTGAATTTCCTTTGTGCTATGGTTATTGGAAGAAGT
ATGCTGATCACCGAGGCACGCGTGGGCTCCATGGACAAAGTTGTGGAAGT
TTACCGAACGGGCAGTTCAAGGGGTGACATATTCAGTAGACATTTGGTTG
CATTACTGCATATTTGCCATAAATACATATGGAGATCCTGAAACCATCCG
AAGGCTTTTTGAACGAGGGTTGGCTTATGTTGGGACAGATTACTTGTCAT
TCCCACTTTGGGACAAATACATTGAATATGAATACATGCAGCAGGAGTGG
A
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