CF503931

Overview
NameCF503931
Unique NameCF503931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503931 vs. ExPASy Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 6.446e-37
Identity = 71/85 (83.53%), Postives = 75/85 (88.24%), Query Frame = 2
Query:   53 VLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 307
            VLQNDIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ++LCQPTGG+A+LTEGCSFRRKGD
Sbjct:    2 VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86          
BLAST of CF503931 vs. ExPASy Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 9.308e-36
Identity = 71/85 (83.53%), Postives = 73/85 (85.88%), Query Frame = 2
Query:   53 VLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 307
            VLQNDIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQ+VLCQPTGG+ARLTEGCSFRRKGD
Sbjct:    2 VLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKGD 86          
BLAST of CF503931 vs. ExPASy Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.671e-34
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 2
Query:   53 VLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 301
            VLQNDIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQ++LC PTGG+A+LTEGCSFR+K
Sbjct:    2 VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84          
BLAST of CF503931 vs. ExPASy Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 8.712e-34
Identity = 67/83 (80.72%), Postives = 71/83 (85.54%), Query Frame = 2
Query:   53 VLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 301
            VLQNDIDLL+PP           RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGG+ARL EGCSFR+K
Sbjct:    2 VLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84          
BLAST of CF503931 vs. ExPASy Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.065e-31
Identity = 65/85 (76.47%), Postives = 68/85 (80.00%), Query Frame = 2
Query:   53 VLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 307
            VL +DIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C SVLC PTG   RLTEGCSFRRK D
Sbjct:    2 VLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGSCSSVLCTPTGWPRRLTEGCSFRRKSD 86          
BLAST of CF503931 vs. ExPASy Swiss-Prot
Match: RS27_SCHPO (40S ribosomal protein S27 OS=Schizosaccharomyces pombe GN=rps27 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.047e-27
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 2
Query:   68 IDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 301
            +DLLNP            +LVQ P SFFMDVKC GCFNITTVFSH+QTVV+CG+C SVLCQPTGG+ARL EGCSFRRK
Sbjct:    5 VDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82          
BLAST of CF503931 vs. ExPASy Swiss-Prot
Match: RS27_XENLA (40S ribosomal protein S27 OS=Xenopus laevis GN=rps27 PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.945e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   71 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 301
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPTPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CF503931 vs. ExPASy Swiss-Prot
Match: RS27_RAT (40S ribosomal protein S27 OS=Rattus norvegicus GN=Rps27 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.945e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   71 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 301
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CF503931 vs. ExPASy Swiss-Prot
Match: RS27_MOUSE (40S ribosomal protein S27 OS=Mus musculus GN=Rps27 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.945e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   71 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 301
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CF503931 vs. ExPASy Swiss-Prot
Match: RS27_HUMAN (40S ribosomal protein S27 OS=Homo sapiens GN=RPS27 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.945e-25
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   71 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 301
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
The following BLAST results are available for this feature:
BLAST of CF503931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS272_ARATH6.446e-3783.5340S ribosomal protein S27-2 OS=Arabidopsis thalian... [more]
RS27_HORVU9.308e-3683.5340S ribosomal protein S27 OS=Hordeum vulgare GN=RP... [more]
RS271_ARATH6.671e-3479.5240S ribosomal protein S27-1 OS=Arabidopsis thalian... [more]
RS273_ARATH8.712e-3480.7240S ribosomal protein S27-3 OS=Arabidopsis thalian... [more]
RS27_CHLRE1.065e-3176.4740S ribosomal protein S27 OS=Chlamydomonas reinhar... [more]
RS27_SCHPO6.047e-2770.5140S ribosomal protein S27 OS=Schizosaccharomyces p... [more]
RS27_XENLA1.945e-2568.8340S ribosomal protein S27 OS=Xenopus laevis GN=rps... [more]
RS27_RAT1.945e-2568.8340S ribosomal protein S27 OS=Rattus norvegicus GN=... [more]
RS27_MOUSE1.945e-2568.8340S ribosomal protein S27 OS=Mus musculus GN=Rps27... [more]
RS27_HUMAN1.945e-2568.8340S ribosomal protein S27 OS=Homo sapiens GN=RPS27... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-419 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503931 ID=CF503931; Name=CF503931; organism=Citrus sinensis; type=EST; length=525bp
CACTCTCTGCTGCTAGGGTTTTCTAGGTTCTCCTGGAGCATTTGCAAACA
CGGTTCTCCAAAATGATATTGATTTGTTGAATCCTCCGGCTGAGCTTGAG
AAGAAGAAGCACAAGCTTAAGCGTCTTGTTCAGTCACCCAATTCCTTTTT
CATGGATGTGAAATGTCAGGGTTGCTTCAACATAACAACTGTTTTCAGCC
ACTCTCAAACTGTGGTGGTTTGTGGCAACTGCCAGTCCGTTCTATGCCAG
CCCACTGGTGGACGTGCCAGACTCACTGAGGGATGTTCTTTCCGGAGAAA
GGGTGACTAAGTGCTACTAAATGATGGAAGAATTTTGTCACATCCTTTCT
TTTTTCCCCCTTTTTCCTCTTTTGTTATGATGTATTAATTTTGATATAAC
TTATGGTGTGGTTGATCTTATGTTTGAAAGATTATATTTCTAAGTGAATT
TTTTGCATGCCGGCTTCTTGATTTTTGCACTCTTGAATGAGGATACTCAT
CTTTATGGATTAAAAAAAAAAAAAA
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