CF503984

Overview
NameCF503984
Unique NameCF503984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503984 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 51/136 (37.50%), Postives = 80/136 (58.82%), Query Frame = 2
Query:  140 VDDSISSSVDGTESSSHTGNLTSNMKNMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFCLCLGIK*EC*KRERGITMTV 547
            ++D+I+SS D  E++S + N    ++     ++  +ST    +K+    Q    K  L  ++G +   LNL ++GHVD+GKSTL G +L+LLG I ++ MHKYE+E+K  GK SF     +     +RERG+TM V
Sbjct:  199 IEDAIASS-DVLETASKSANPPHTIQ----ASEEQSSTPAPVKKSGKLRQQIDVKAELEKRQGGKQL-LNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDV 328          
BLAST of CF503984 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 51/136 (37.50%), Postives = 80/136 (58.82%), Query Frame = 2
Query:  140 VDDSISSSVDGTESSSHTGNLTSNMKNMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFCLCLGIK*EC*KRERGITMTV 547
            ++D+I+SS D  E++S + N    ++     ++  +ST    +K+    Q    K  L  ++G +   LNL ++GHVD+GKSTL G +L+LLG I ++ MHKYE+E+K  GK SF     +     +RERG+TM V
Sbjct:  199 IEDAIASS-DVLETASKSANPPHTIQ----ASEEQSSTPAPVKKSGKLRQQIDVKAELEKRQGGKQL-LNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDV 328          
BLAST of CF503984 vs. ExPASy Swiss-Prot
Match: HBS1L_BOVIN (HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.541e-15
Identity = 52/139 (37.41%), Postives = 79/139 (56.83%), Query Frame = 2
Query:  131 HGTVDDSISSSVDGTESSSHTGNLTSNMKNMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFCLCLGIK*EC*KRERGITMTV 547
            H + D S+ SS D  ES+S +   +  ++     ++  +ST    +K+    Q    K  L  ++G +   LNL ++GHVD+GKSTL G LL+LLG + ++ MHKYE+E+K  GK SF     +     +RERG+TM V
Sbjct:  198 HSSEDTSLVSS-DALESASKSALPSHTIQ----ASEEQSSTPTPVKKSGKLRQQIDIKAELEKRQGGKQL-LNLVVIGHVDAGKSTLMGHLLYLLGDVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDV 330          
BLAST of CF503984 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.650e-15
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  230 TAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFCLCLGIK*EC*KRERGITMTV 547
            T++   ST    RK+    Q    K  L  ++G +   LNL ++GHVD+GKSTL G +L+LLG + ++ MHKYE+E+K  GK SF     +     +RERG+TM V
Sbjct:  222 TSEELGSTPTPVRKSGKLRQQIDVKAELEKRQGGKQL-LNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDV 326          
BLAST of CF503984 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  230 TAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFCLCLGIK*EC*KRERGITMTV 547
            T++    T    RK+    Q    K  L  ++G +   LNL ++GHVD+GKSTL G +L+LLG + ++ MHKYE+E+K  GK SF     +     +RERG+TM V
Sbjct:  219 TSEELGCTPTPLRKSGKLRQQIDVKAGLEKRQGGKQL-LNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDV 323          
BLAST of CF503984 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.702e-11
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 2
Query:  326 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFCLCLGIK*EC*KRERGITMTV 547
            G   T +NL ++GHVDSGKST +G L++ LG I ++ + K+EKE+   GKGSF     +     +RERGIT+ +
Sbjct:    2 GKEKTHINLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESSEMGKGSFKYAWVLDKLKAERERGITIDI 75          
BLAST of CF503984 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.702e-11
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  323 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFCLCLGIK*EC*KRERGITMTV 547
            KGD+ T +N+ ++GHVDSGKST +G L++  G I ++ + K+EKEA+  GKGSF     +     +RERGIT+ +
Sbjct:    3 KGDK-THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 76          
The following BLAST results are available for this feature:
BLAST of CF503984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HBS1L_PONAB5.298e-1637.50HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_HUMAN5.298e-1637.50HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]
HBS1L_BOVIN1.541e-1537.41HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1[more]
HBS1L_MOUSE7.650e-1541.51HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
HBS1L_RAT4.959e-1440.57HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
EF1A_CRYPV6.702e-1144.59Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A3_OSCTI6.702e-1145.33Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-472 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503984 ID=CF503984; Name=CF503984; organism=Citrus sinensis; type=EST; length=548bp
GCAAGATAGCGTGGATGAGAGAAATAGCTTGAAGAATGAAGTACGTGCAA
GTTCTAGAATTTCTGACAGCTCTTCTGTAGTAATGGCAAAAGATAGACTA
GGCACTATTGATGAGGGAAATTGCTCGAACCACGGTACAGTGGATGATAG
CATTAGTTCTTCAGTCGATGGGACTGAATCAAGTAGTCATACTGGTAATT
TGACCAGTAATATGAAGAACATGTCGTCGACTGCTAAATCTGGAAATTCA
ACCAATGTAAGTGCCAGAAAAACAAATTCACATACTCAGTATAAACCTGA
AAAGTGGATGCTCCCAGACAAAAAAGGAGATAGAATGACTCAACTAAATC
TTGCAATAGTTGGCCATGTTGATTCGGGAAAATCAACTCTCTCAGGTAGA
CTGTTGTTTCTTCTTGGACGAATAACCCAAAAACAAATGCACAAATATGA
AAAAGAGGCCAAATTGCAGGGCAAAGGATCATTTTGCTTATGCTTGGGCA
TTAAATGAGAGTGCTGAAAGAGGGAACGGGGAATAACTATGACTGTGG
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