CF504061
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 7.537e-34 Identity = 70/118 (59.32%), Postives = 94/118 (79.66%), Query Frame = 1 Query: 16 MAFCGKLGMLVRQN----GQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 357 MAFC KLG L+RQN G P S++ ++R MS TKLF+GGLSWGTDD+SL++AF++FGD+ +AKVI +RE+G+SRGFGFV ++ +A++A S MDG+ELNGR+IRV+ ANDRP Sbjct: 1 MAFCNKLGGLLRQNISSNGNVPVTSMLGSLRLMS---TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 3.067e-27 Identity = 62/114 (54.39%), Postives = 86/114 (75.44%), Query Frame = 1 Query: 16 MAFCGKLGMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 357 MAFC KLG +Q P +S++ ++R+MS TKL++GGLS GTD+ SLK+AFS+F +TEA+V+T + +G+SRG+GFV + S +SA+SA SAM+GQELNG NI V+ A D P Sbjct: 1 MAFCTKLGGHWKQGVNVPVSSMLGSLRYMS---TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP 111
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.515e-21 Identity = 46/85 (54.12%), Postives = 65/85 (76.47%), Query Frame = 1 Query: 100 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 354 M+ + + FVGGL W TDD SL+ AFS +GD+ ++K+IT+RE+G+SRGFGFVT+ S+E+ A AM+GQ+L+GRNI V+ A R Sbjct: 1 MADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.515e-21 Identity = 46/85 (54.12%), Postives = 65/85 (76.47%), Query Frame = 1 Query: 100 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 354 M++ + + FVGGL+W T+D SL++AFS FGDIT++K+I +RE+G+SRGFGFVT+ +S A M+GQEL+GRNI V+ A R Sbjct: 1 MAEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20 Identity = 43/83 (51.81%), Postives = 64/83 (77.11%), Query Frame = 1 Query: 109 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 357 S +++VG LSWG DD +LKE FS G++ +AKV+ +R+SG+SRGFGFVTY S++ + A +++G +L+GR+IRVS A +RP Sbjct: 205 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP 287
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20 Identity = 44/84 (52.38%), Postives = 62/84 (73.81%), Query Frame = 1 Query: 109 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 360 S +++VG LSWG DD +L+ FS G + EA+VI +R+SG+S+GFGFVTYDS++ +A ++DG +L+GR IRVS A RPP Sbjct: 202 SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.380e-19 Identity = 43/83 (51.81%), Postives = 63/83 (75.90%), Query Frame = 1 Query: 109 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 357 S +++VG LSWG DD +LKE FS G++ +AKV+ +R+SG+SRGFGFVTY S + + A +++G +L+GR+IRVS A +RP Sbjct: 206 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP 288
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 4.015e-19 Identity = 42/79 (53.16%), Postives = 62/79 (78.48%), Query Frame = 1 Query: 118 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 354 + FVGGL+W T++ +L++AF+NFG + ++KVIT+RE+G+SRGFGFVT+ S +S A M+G+EL+GRNI V+ A R Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 5.244e-19 Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1 Query: 109 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 360 S +++VG L+WG D +L+ FS G + +AKV+ +R+SG+SRGFGFVTY S E ++A ++DG +LNGR IRVS A RPP Sbjct: 186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 269 HSP 2 Score: 66.6254 bits (161), Expect = 6.864e-11 Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1 Query: 118 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 360 K+FVG L + D ++L E F G++ +VI ++ +G+SRGFGFVT S E +A +G EL+GR +RV N PP Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV---NSGPP 165
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 5.244e-19 Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1 Query: 109 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 360 S +++VG L+WG D +L+ FS G + +AKV+ +R+SG+SRGFGFVTY S E ++A ++DG +LNGR IRVS A RPP Sbjct: 192 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 275 HSP 2 Score: 66.2402 bits (160), Expect = 8.965e-11 Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1 Query: 118 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 360 K+FVG L + D ++L E F G++ +VI ++ +G+SRGFGFVT S E +A +G EL+GR +RV N PP Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV---NSGPP 165 The following BLAST results are available for this feature:
BLAST of CF504061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504061 ID=CF504061; Name=CF504061; organism=Citrus sinensis; type=EST; length=493bpback to top |