CF504061

Overview
NameCF504061
Unique NameCF504061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 7.537e-34
Identity = 70/118 (59.32%), Postives = 94/118 (79.66%), Query Frame = 1
Query:   16 MAFCGKLGMLVRQN----GQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 357
            MAFC KLG L+RQN    G  P  S++ ++R MS   TKLF+GGLSWGTDD+SL++AF++FGD+ +AKVI +RE+G+SRGFGFV ++   +A++A S MDG+ELNGR+IRV+ ANDRP
Sbjct:    1 MAFCNKLGGLLRQNISSNGNVPVTSMLGSLRLMS---TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115          
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.067e-27
Identity = 62/114 (54.39%), Postives = 86/114 (75.44%), Query Frame = 1
Query:   16 MAFCGKLGMLVRQNGQAPKASLINAVRFMSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 357
            MAFC KLG   +Q    P +S++ ++R+MS   TKL++GGLS GTD+ SLK+AFS+F  +TEA+V+T + +G+SRG+GFV + S +SA+SA SAM+GQELNG NI V+ A D P
Sbjct:    1 MAFCTKLGGHWKQGVNVPVSSMLGSLRYMS---TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP 111          
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.515e-21
Identity = 46/85 (54.12%), Postives = 65/85 (76.47%), Query Frame = 1
Query:  100 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 354
            M+  + + FVGGL W TDD SL+ AFS +GD+ ++K+IT+RE+G+SRGFGFVT+ S+E+   A  AM+GQ+L+GRNI V+ A  R
Sbjct:    1 MADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85          
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.515e-21
Identity = 46/85 (54.12%), Postives = 65/85 (76.47%), Query Frame = 1
Query:  100 MSQSQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 354
            M++ + + FVGGL+W T+D SL++AFS FGDIT++K+I +RE+G+SRGFGFVT+   +S   A   M+GQEL+GRNI V+ A  R
Sbjct:    1 MAEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85          
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20
Identity = 43/83 (51.81%), Postives = 64/83 (77.11%), Query Frame = 1
Query:  109 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 357
            S  +++VG LSWG DD +LKE FS  G++ +AKV+ +R+SG+SRGFGFVTY S++  + A  +++G +L+GR+IRVS A +RP
Sbjct:  205 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP 287          
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20
Identity = 44/84 (52.38%), Postives = 62/84 (73.81%), Query Frame = 1
Query:  109 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 360
            S  +++VG LSWG DD +L+  FS  G + EA+VI +R+SG+S+GFGFVTYDS++   +A  ++DG +L+GR IRVS A  RPP
Sbjct:  202 SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285          
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.380e-19
Identity = 43/83 (51.81%), Postives = 63/83 (75.90%), Query Frame = 1
Query:  109 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRP 357
            S  +++VG LSWG DD +LKE FS  G++ +AKV+ +R+SG+SRGFGFVTY S +  + A  +++G +L+GR+IRVS A +RP
Sbjct:  206 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP 288          
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.015e-19
Identity = 42/79 (53.16%), Postives = 62/79 (78.48%), Query Frame = 1
Query:  118 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDR 354
            + FVGGL+W T++ +L++AF+NFG + ++KVIT+RE+G+SRGFGFVT+ S +S   A   M+G+EL+GRNI V+ A  R
Sbjct:    9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.244e-19
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  109 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 360
            S  +++VG L+WG D  +L+  FS  G + +AKV+ +R+SG+SRGFGFVTY S E  ++A  ++DG +LNGR IRVS A  RPP
Sbjct:  186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 269          

HSP 2 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query:  118 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 360
            K+FVG L +  D ++L E F   G++   +VI ++ +G+SRGFGFVT  S E   +A    +G EL+GR +RV   N  PP
Sbjct:   88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV---NSGPP 165          
BLAST of CF504061 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.244e-19
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  109 SQTKLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 360
            S  +++VG L+WG D  +L+  FS  G + +AKV+ +R+SG+SRGFGFVTY S E  ++A  ++DG +LNGR IRVS A  RPP
Sbjct:  192 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 275          

HSP 2 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query:  118 KLFVGGLSWGTDDSSLKEAFSNFGDITEAKVITERESGKSRGFGFVTYDSNESASSAQSAMDGQELNGRNIRVSFANDRPP 360
            K+FVG L +  D ++L E F   G++   +VI ++ +G+SRGFGFVT  S E   +A    +G EL+GR +RV   N  PP
Sbjct:   88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV---NSGPP 165          
The following BLAST results are available for this feature:
BLAST of CF504061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
GRP2_ARATH7.537e-3459.32Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
RT19_ARATH3.067e-2754.3940S ribosomal protein S19, mitochondrial OS=Arabid... [more]
GRP_HORVU2.515e-2154.12Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP1_DAUCA2.515e-2154.12Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
ROC2_NICSY4.743e-2051.8129 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC1_ARATH4.743e-2052.38Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC2_NICPL1.380e-1951.8131 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
GRP2_SORBI4.015e-1953.16Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
ROC1_NICSY5.244e-1951.1929 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL5.244e-1951.1930 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-549 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504061 ID=CF504061; Name=CF504061; organism=Citrus sinensis; type=EST; length=493bp
GCTTAAGAGACAAAAATGGCATTTTGTGGCAAACTTGGGATGCTAGTTAG
GCAGAATGGCCAGGCTCCAAAGGCATCTTTGATAAATGCGGTTCGATTCA
TGTCGCAATCACAAACTAAGCTTTTTGTTGGAGGGCTATCTTGGGGAACC
GATGACAGTTCTCTCAAGGAAGCGTTTTCCAACTTTGGCGATATCACTGA
AGCAAAGGTTATTACTGAGAGAGAATCTGGGAAGTCAAGAGGATTTGGGT
TCGTTACCTACGACTCTAATGAATCTGCCAGCTCGGCACAGTCTGCAATG
GATGGCCAGGAGCTAAATGGGAGAAACATTCGGGTGTCTTTTGCCAATGA
CAGACCTCCTCGCTCTGACGGTGGCTATGGTGGAGGGAATGATGGATCTT
ATGGCGGCAACCGTGGCGGTTACAGAGTCAACTACAGAGGAGGGGATGAT
GGTTTTTAAGGGGATTCTATTCAATTTTTGGGCGTGCTTTACT
back to top