CF504120

Overview
NameCF504120
Unique NameCF504120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length226
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1217 contig Csv1_Contig1217:250..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504120 vs. ExPASy Swiss-Prot
Match: APX1_PEA (L-ascorbate peroxidase, cytosolic OS=Pisum sativum GN=APX1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.094e-23
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 3
Query:    3 RAESARG--NGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE 194
            +AE A G  NGLDIAVRLLEP KEQFP +SYAD YQLAGVV VE+TGGP++PFHPGR+DK EPP E
Sbjct:   63 QAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPE 128          
BLAST of CF504120 vs. ExPASy Swiss-Prot
Match: APX2_ARATH (L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis thaliana GN=APX2 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 1.062e-20
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = 3
Query:   24 NGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE 194
            NGLDIAVRLL+P KE FP +SYAD YQLAGVV VE+TGGP+IPFHPGR DK EPP E
Sbjct:   73 NGLDIAVRLLDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPE 129          
BLAST of CF504120 vs. ExPASy Swiss-Prot
Match: APX1_ARATH (L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis thaliana GN=APX1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.387e-20
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 3
Query:    6 AESARG--NGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE 194
            AE A G  +G+ IA+RLL+P +EQFPTIS+AD +QLAGVV VEVTGGPDIPFHPGR+DK +PP E
Sbjct:   64 AEQAHGANSGIHIALRLLDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPE 128          
BLAST of CF504120 vs. ExPASy Swiss-Prot
Match: APX2_ORYSJ (L-ascorbate peroxidase 2, cytosolic OS=Oryza sativa subsp. japonica GN=APX2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.090e-20
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 3
Query:   15 ARGNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE 194
            A   GLDIAVRLL+P K+Q P +SYAD YQLAGVV VEVTGGP++PFHPGR DK EPP E
Sbjct:   70 AANAGLDIAVRLLDPIKDQLPILSYADFYQLAGVVAVEVTGGPEVPFHPGRQDKPEPPPE 129          
BLAST of CF504120 vs. ExPASy Swiss-Prot
Match: APX1_ORYSJ (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. japonica GN=APX1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.884e-20
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 3
Query:   15 ARGNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE 194
            A   GLDIAVR+LEP KE+ PTISYAD YQLAGVV VEV+GGP +PFHPGR+DK  PP E
Sbjct:   69 AANAGLDIAVRMLEPIKEEIPTISYADFYQLAGVVAVEVSGGPAVPFHPGREDKPAPPPE 128          
BLAST of CF504120 vs. ExPASy Swiss-Prot
Match: APX1_ORYSI (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. indica GN=APX1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.884e-20
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 3
Query:   15 ARGNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE 194
            A   GLDIAVR+LEP KE+ PTISYAD YQLAGVV VEV+GGP +PFHPGR+DK  PP E
Sbjct:   69 AANAGLDIAVRMLEPIKEEIPTISYADFYQLAGVVAVEVSGGPAVPFHPGREDKPAPPPE 128          
BLAST of CF504120 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.322e-14
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 3
Query:   15 ARGNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE 194
            A   G+ IA+ LLEP K++ P I+YADLYQLAGVV VEVTGGP I + PGR D ++ P+E
Sbjct:   68 AANAGIKIAIDLLEPMKQKHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEE 127          
BLAST of CF504120 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.322e-14
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 3
Query:   15 ARGNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE 194
            A   G+ IA+ LLEP K++ P I+YADLYQLAGVV VEVTGGP I + PGR D ++ P+E
Sbjct:   68 AANAGIKIAIDLLEPMKQRHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEE 127          
BLAST of CF504120 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.659e-13
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   27 GLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE 194
            GL IA+ LLEP K + P I+YADLYQLAGVV VEVTGGP + F PGR D +  P+E
Sbjct:   71 GLKIAIDLLEPIKAKSPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRDSSVCPRE 126          
BLAST of CF504120 vs. ExPASy Swiss-Prot
Match: APX3_ARATH (L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.299e-12
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 3
Query:   24 NGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQE 194
            +GL IA+ L E  K + P I+YADLYQLAGVV VEVTGGPDI F PGR D    P+E
Sbjct:   70 SGLKIALDLCEGVKAKHPKITYADLYQLAGVVAVEVTGGPDIVFVPGRKDSNVCPKE 126          

HSP 2 Score: 20.7866 bits (42), Expect = 3.299e-12
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 2
Query:  197 RLPDAKQG 220
            RLPDAKQG
Sbjct:  128 RLPDAKQG 135          
The following BLAST results are available for this feature:
BLAST of CF504120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
APX1_PEA5.094e-2375.76L-ascorbate peroxidase, cytosolic OS=Pisum sativum... [more]
APX2_ARATH1.062e-2078.95L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis... [more]
APX1_ARATH1.387e-2070.77L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis... [more]
APX2_ORYSJ3.090e-2073.33L-ascorbate peroxidase 2, cytosolic OS=Oryza sativ... [more]
APX1_ORYSJ6.884e-2073.33L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX1_ORYSI6.884e-2073.33L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX3_ORYSJ4.322e-1460.00Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI4.322e-1460.00Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX4_ORYSJ3.659e-1364.29Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX3_ARATH3.299e-1263.16L-ascorbate peroxidase 3, peroxisomal OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-608 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504120 ID=CF504120; Name=CF504120; organism=Citrus sinensis; type=EST; length=226bp
CTCGTGCCGAATCGGCACGAGGCAACGGCCTCGATATTGCCGTTAGGCTT
TTGGAGCCGTTCAAGGAGCAGTTCCCTACCATCTCCTACGCTGACCTTTA
TCAGCTTGCTGGTGTTGTTGGCGTTGAGGTTACCGGTGGGCCCGATATCC
CCTTCCACCCTGGAAGAGATGACAAGGCTGAGCCACCTCAAGAAGCCGGC
TTCCTGATGCTAAACAGGGTAATGAT
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