CF504169

Overview
NameCF504169
Unique NameCF504169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.901e-29
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 2 
Query:  125 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            ST   ++DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERF+T+TSSYYRGA GII+ YD
Sbjct:    2 STMNPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 92
[Close]
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 1.032e-28
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 2 
Query:  125 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERF+T+TSSYYRGA GII+ YD
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 92
[Close]
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 1.032e-28
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 2 
Query:  125 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERF+T+TSSYYRGA GII+ YD
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 92
[Close]
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 1.032e-28
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 2 
Query:  125 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERF+T+TSSYYRGA GII+ YD
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 92
[Close]
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 1.032e-28
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 2 
Query:  125 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERF+T+TSSYYRGA GII+ YD
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 92
[Close]
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 1.032e-28
Identity = 63/91 (69.23%), Postives = 72/91 (79.12%), Query Frame = 2 
Query:  125 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERF+T+TSSYYRGA GII+ YD
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 92
[Close]
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.299e-28
Identity = 63/86 (73.26%), Postives = 70/86 (81.40%), Query Frame = 2 
Query:  140 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ V L GK +KL IWDTAGQERF+T+TSSYYRGA GII+ YD
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89
[Close]
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.299e-28
Identity = 63/86 (73.26%), Postives = 70/86 (81.40%), Query Frame = 2 
Query:  140 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ V L GK +KL IWDTAGQERF+T+TSSYYRGA GII+ YD
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89
[Close]
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.299e-28
Identity = 62/86 (72.09%), Postives = 70/86 (81.40%), Query Frame = 2 
Query:  140 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERF+T+TSSYYRGA GII+ YD
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89
[Close]
BLAST of CF504169 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.299e-28
Identity = 62/86 (72.09%), Postives = 70/86 (81.40%), Query Frame = 2 
Query:  140 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVTLGGKKLKLAIWDTAGQERFKTLTSSYYRGAQGIIMGYD 394
            E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERF+T+TSSYYRGA GII+ YD
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYD 89
The following BLAST results are available for this feature:
BLAST of CF504169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
RAB1A_LYMST7.901e-2969.23Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB1A_RAT1.032e-2869.23Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_PIG1.032e-2869.23Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_MOUSE1.032e-2869.23Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN1.032e-2869.23Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA1.032e-2869.23Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
YPTV1_VOLCA2.299e-2873.26GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
YPTC1_CHLRE2.299e-2873.26GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
YPT1_PHYIN2.299e-2872.09Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB1_DISOM2.299e-2872.09Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-657 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504169 ID=CF504169; Name=CF504169; organism=Citrus sinensis; type=EST; length=394bp
ATTTGCTTTTCCTGTTTTTTGCCTTCACATTGCTTAACATTTTATCAAAA
CATCAGCTTCGGATCCAAAGCCATCAGCTTGAACCCAAAAGTCTTCGTTT
TTATTTGTTTGTTTGATGGCTTCTTCAACGAGTCAGCAGGAGTTCGATTA
CTTGTTTAAGTTGCTGTTAATTGGAGATTCTGGGGTTGGCAAGAGTACTT
TGCTATTGAGTTTCACTTCTGATACCTTTGAGGAGCTCTCTCCTACCATT
GGTGTGGATTTTAAGATAAAGCATGTTACTCTTGGTGGTAAAAAATTGAA
GCTTGCCATTTGGGACACGGCTGGGCAGGAAAGATTTAAAACACTAACTA
GTTCCTATTACAGGGGAGCCCAAGGGATAATCATGGGTTATGAT
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