CF504194

Overview
NameCF504194
Unique NameCF504194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13011 contig Csv1_Contig13011:88..428. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504194 vs. ExPASy Swiss-Prot
Match: PP125_ARATH (Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.539e-37
Identity = 73/113 (64.60%), Postives = 90/113 (79.65%), Query Frame = 2 
Query:    2 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVXXXXXXXXXXXXAKEILRL 340
            E + RM+++ CEPN QTYN++IRY+ +  E+E+ L LFEKMGSG CLPNLDTYNILIS MFVRK+S+D++VAGKLL+EMV+RGF+PRKFTFNRV            AKEILRL
Sbjct:  356 ELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILRL 468
[Close]
BLAST of CF504194 vs. ExPASy Swiss-Prot
Match: PP407_ARATH (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.017e-12
Identity = 41/89 (46.07%), Postives = 51/89 (57.30%), Query Frame = 2 
Query:   17 MKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 283
            M + +  PNV TYNILIR FC AG I+  L LF+KM +  CLPN+ TYN LI      +K DD     KLL  M  +G  P   ++N V
Sbjct:  196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDD---GFKLLRSMALKGLEPNLISYNVV 281
The following BLAST results are available for this feature:
BLAST of CF504194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP125_ARATH3.539e-3764.60Pentatricopeptide repeat-containing protein At1g74... [more]
PP407_ARATH3.017e-1246.07Pentatricopeptide repeat-containing protein At5g39... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-682 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504194 ID=CF504194; Name=CF504194; organism=Citrus sinensis; type=EST; length=341bp
GGAATTTGTGGGAAGAATGAAGGATGATGAGTGTGAGCCAAATGTGCAGA
CTTACAATATTTTGATCCGATATTTTTGTGATGCTGGAGAGATTGAAAGG
GGTTTGGAGTTGTTTGAGAAGATGGGTAGTGGGGTTTGCTTGCCAAATTT
AGATACGTACAATATTTTAATTAGTTCAATGTTTGTGAGGAAGAAATCAG
ATGATTTGCTGGTGGCTGGGAAGTTGTTGATTGAAATGGTTGATAGAGGA
TTCATGCCAAGGAAGTTCACTTTCAATCGAGTTTTGAATGGGCTTCTACT
AATGGGTAATCAAGGTCTAGCCAAAGAGATTCTGAGATTGC
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