CF504201

Overview
NameCF504201
Unique NameCF504201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504201_ssr15 microsatellite CF504201_ssr15:15..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig525 contig Csv1_Contig525:1..402. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504201 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.769e-35
Identity = 70/116 (60.34%), Postives = 84/116 (72.41%), Query Frame = 1 
Query:   52 LTDPNSNRNPIQSHLSFAFTHHYPMGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTN 399
            L+D +S +  + S+    FT    +  P NG       LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KPTHVFNAAG+TGRPNVDWCESHK ETIR N
Sbjct:  349 LSDGSSEKKDVSSNTVQTFT----VVTPKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKPTHVFNAAGLTGRPNVDWCESHKPETIRVN 460
[Close]
BLAST of CF504201 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.052e-32
Identity = 61/86 (70.93%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:  142 GSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTN 399
            G     + LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KP+HVFNAAG+TGRPNVDWCESHK ETIR N
Sbjct:  372 GCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHVFNAAGLTGRPNVDWCESHKTETIRVN 457
[Close]
BLAST of CF504201 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.963e-31
Identity = 66/98 (67.35%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:  109 THHYPMGFPANGSDAGSKP-LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTN 399
            TH       +NG+    KP LKFLIYG+TGWIGGLLGK+C  Q I + YG GRLE+R+SL  DI +VKPTHVFN+AGVTGRPNVDWCESHK ETIR N
Sbjct:  367 THMVVPSQRSNGTP--QKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSAGVTGRPNVDWCESHKTETIRAN 462
The following BLAST results are available for this feature:
BLAST of CF504201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RHM2_ARATH5.769e-3560.34Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
RHM3_ARATH2.052e-3270.93Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM1_ARATH2.963e-3167.35Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-689 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504201 ID=CF504201; Name=CF504201; organism=Citrus sinensis; type=EST; length=402bp
CTGAAAGCCACCCAACACACACACATAGATTCCAATCAATAGTACGAAAT
TCTAACAGATCCAAATTCAAATCGAAATCCGATCCAGTCTCATCTCTCCT
TTGCATTCACTCACCATTACCCAATGGGTTTCCCAGCCAACGGCTCCGAC
GCCGGCTCCAAGCCGCTCAAGTTTCTCATCTACGGCCGCACTGGCTGGAT
CGGGGGCTTGCTCGGCAAGCTCTGCCAAGCTCAGTCCATTGACTTCACCT
ACGGCTCCGGCCGCCTCGAGAACCGCGCCTCCCTCGAAGCCGACATCGCC
GCCGTCAAGCCCACCCACGTCTTCAACGCGGCCGGGGTGACCGGTAGGCC
CAACGTCGACTGGTGCGAATCGCATAAGGTCGAGACCATACGGACTAATG
GC
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