CF504239

Overview
NameCF504239
Unique NameCF504239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length304
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504239 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.258e-15
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 3 
Query:  180 MANGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMI 302
            MAN NLPRRI+KETQRLLSEPAPGISASP+EDNMRYFNVMI
Sbjct:    1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMI 41
[Close]
BLAST of CF504239 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.571e-15
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 3 
Query:  180 MANGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMI 302
            MAN NLPRRI+KETQRLLSEPAPGISASP+E+NMRYFNVMI
Sbjct:    1 MANSNLPRRIIKETQRLLSEPAPGISASPSEENMRYFNVMI 41
The following BLAST results are available for this feature:
BLAST of CF504239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBC35_ARATH2.258e-1592.68Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC36_ARATH6.571e-1590.24Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-728 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504239 ID=CF504239; Name=CF504239; organism=Citrus sinensis; type=EST; length=304bp
TTTTTTATCAATTGAGGGAAGCAAAGGCTTGAGTGGGGGATGCCAAACAT
CCCTTTGATTGATGTTAGCTTAAAATCTCCCCATTCACAAGTCACGAGAA
AAAGAAAGAGGAGAAGAGGGAGAGGGAAAAAAAGACGATCGATTTCTGAC
TCATCTCTGTAAAATCTCTTGGAATTCCGATGGCTAATGGCAACCTCCCT
CGCAGAATTGTCAAGGAAACCCAGCGGCTGCTCAGTGAACCAGCTCCAGG
CATTAGTGCTTCTCCTGCCGAAGACAACATGCGATATTTTAATGTAATGA
TTCT
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