CF504262

Overview
NameCF504262
Unique NameCF504262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504262 vs. ExPASy Swiss-Prot
Match: SDF2_ARATH (Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana GN=At2g25110 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.353e-61
Identity = 102/131 (77.86%), Postives = 119/131 (90.84%), Query Frame = 2
Query:    2 KPILGASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTES 394
            KP+ G + KQGD +KSG  IRLQHM+TRKWLHSHLHASPISGNLE+SCFG +  SDTGD+W+++IEGSGKTW+QDQR+RLQH+DT GYLHSH KKYQRIAGGQQEVCG+REK+ADN+WLAAEGVYLP+ ES
Sbjct:   86 KPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKADNIWLAAEGVYLPLNES 216          
BLAST of CF504262 vs. ExPASy Swiss-Prot
Match: SDF2_DICDI (Stromal cell-derived factor 2-like protein OS=Dictyostelium discoideum GN=DDB_G0284847 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 56/122 (45.90%), Postives = 69/122 (56.56%), Query Frame = 2
Query:   14 GASAKQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHS-HPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVY 376
            G    QG  +K+G IIRL H  T+K LHSHL  SP++   E+SCFG   E DTGD W V  E SGK W + Q +R +H DT  YL +    KYQ    GQ E+ G + K  D  W   EG+Y
Sbjct:   88 GNRVLQGTVVKNGDIIRLVHSNTKKNLHSHLAVSPLTKQNEVSCFGENGEGDTGDNWIVETE-SGKEWMRGQVVRFKHADTKTYLQAIESAKYQNPIPGQIEISGGKSKNEDTKWRTEEGIY 208          
BLAST of CF504262 vs. ExPASy Swiss-Prot
Match: SDF2_MOUSE (Stromal cell-derived factor 2 OS=Mus musculus GN=Sdf2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.183e-18
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = 2
Query:   26 KQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTE 391
            ++G  IK G  IRL H+ T + LHSH   SP+SGN E+S FG E E D  D W V+   +G  W +D  +R +H  T   L    ++Y R   GQ+EV G+ +   +N W A EG+++  +E
Sbjct:   81 ERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSE 200          
BLAST of CF504262 vs. ExPASy Swiss-Prot
Match: SDF2_HUMAN (Stromal cell-derived factor 2 OS=Homo sapiens GN=SDF2 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 9.183e-18
Identity = 52/131 (39.69%), Postives = 73/131 (55.73%), Query Frame = 2
Query:    8 ILGASA---KQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTE 391
            I G SA   ++G  IK G  IRL H+ T + LHSH   SP+SGN E+S FG E E D  D W V+   +G  W +D  +R +H  T   L    ++Y R   GQ+EV G+ +   +N W A EG+++  +E
Sbjct:   72 IRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSE 200          
BLAST of CF504262 vs. ExPASy Swiss-Prot
Match: SDF2_BOVIN (Stromal cell-derived factor 2 OS=Bos taurus GN=SDF2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.672e-17
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = 2
Query:   26 KQGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTE 391
            ++G  I+ G  IRL H+ T + LHSH   SP+SGN E+S FG E E D  D W V+   +G  W +D  +R +H  T   L    ++Y R   GQ+EV G+ +   +N W A EG+++  +E
Sbjct:   81 ERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC--NGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSE 200          
BLAST of CF504262 vs. ExPASy Swiss-Prot
Match: SDF2L_MOUSE (Stromal cell-derived factor 2-like protein 1 OS=Mus musculus GN=Sdf2l1 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.326e-16
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 2
Query:   29 QGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYL 379
            +G  ++ G  +RL H+ T K LH+H   SP+S N E+S FG + E D  D W V    SG+ W ++  +R QHV T  +L    ++Y     GQ EV G+    A N W A EG+++
Sbjct:   94 RGLPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREASVRFQHVGTSVFLSVTGEQYGNPIRGQHEVHGMPSANAHNTWKAMEGIFI 208          
BLAST of CF504262 vs. ExPASy Swiss-Prot
Match: SDF2L_HUMAN (Stromal cell-derived factor 2-like protein 1 OS=Homo sapiens GN=SDF2L1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.732e-16
Identity = 43/117 (36.75%), Postives = 63/117 (53.85%), Query Frame = 2
Query:   29 QGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYL 379
            +G  ++ G  +RL H+ T K LH+H   SP+S N E+S FG + E D  D W V    SG+ W ++  +R QHV T  +L    ++Y     GQ EV G+      N W A EG+++
Sbjct:   94 RGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMPSANTHNTWKAMEGIFI 208          
BLAST of CF504262 vs. ExPASy Swiss-Prot
Match: SDF2L_BOVIN (Stromal cell-derived factor 2-like protein 1 OS=Bos taurus GN=SDF2L1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.262e-16
Identity = 43/117 (36.75%), Postives = 64/117 (54.70%), Query Frame = 2
Query:   29 QGDTIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEISCFGGEEESDTGDYWRVMIEGSGKTWRQDQRIRLQHVDTGGYLHSHPKKYQRIAGGQQEVCGVREKRADNVWLAAEGVYL 379
            +G  ++ G  +RL H+ T K LH+H   SP++ N E+S FG + E D  D W V    SG+ W ++  +R QHV T  +L    ++Y     GQ EV G+    A N W A EG+++
Sbjct:   94 RGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLTNNQEVSAFGEDGEGDDLDLWTVRC--SGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMASASAHNKWKAMEGIFI 208          
The following BLAST results are available for this feature:
BLAST of CF504262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SDF2_ARATH1.353e-6177.86Stromal cell-derived factor 2-like protein OS=Arab... [more]
SDF2_DICDI9.480e-2345.90Stromal cell-derived factor 2-like protein OS=Dict... [more]
SDF2_MOUSE9.183e-1839.34Stromal cell-derived factor 2 OS=Mus musculus GN=S... [more]
SDF2_HUMAN9.183e-1839.69Stromal cell-derived factor 2 OS=Homo sapiens GN=S... [more]
SDF2_BOVIN2.672e-1738.52Stromal cell-derived factor 2 OS=Bos taurus GN=SDF... [more]
SDF2L_MOUSE1.326e-1637.61Stromal cell-derived factor 2-like protein 1 OS=Mu... [more]
SDF2L_HUMAN1.732e-1636.75Stromal cell-derived factor 2-like protein 1 OS=Ho... [more]
SDF2L_BOVIN2.262e-1636.75Stromal cell-derived factor 2-like protein 1 OS=Bo... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-751 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504262 ID=CF504262; Name=CF504262; organism=Citrus sinensis; type=EST; length=483bp
TAAGCCTATTCTAGGGGCATCTGCCAAACAAGGCGACACCATAAAGAGTG
GGACTATTATCCGGTTGCAGCACATGAGAACTAGAAAATGGCTGCACAGC
CATTTGCATGCGTCCCCAATTTCAGGAAACCTTGAGATTAGCTGTTTCGG
AGGCGAAGAGGAATCTGATACTGGTGATTACTGGAGGGTTATGATTGAGG
GTAGCGGAAAGACTTGGAGGCAAGATCAAAGGATTCGGCTTCAACACGTT
GACACAGGTGGCTACTTACATAGTCATCCCAAGAAATATCAGCGGATAGC
TGGCGGACAGCAAGAGGTCTGTGGCGTCAGAGAAAAGCGTGCTGATAATG
TGTGGTTAGCCGCTGAAGGTGTATACCTCCCTGTTACTGAGAGCAAGTAG
ATTTTGGTGACATTATGTGAAGTTACCCTGTAAAACAGGTGCTTGGGTTT
TTGGATATTTAGGTGGCTGGTGCCTGTTCTTAT
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