CF504276

Overview
NameCF504276
Unique NameCF504276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504276 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.580e-18
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = -3 
Query:  368 ISILSMLSSSTVKQRPADNDRYVKNCRNGRSPKETRWWFHDDKV 499
            ISILSMLSSST KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct:  118 ISILSMLSSSTEKQRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161
[Close]
BLAST of CF504276 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.580e-18
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = -3 
Query:  368 ISILSMLSSSTVKQRPADNDRYVKNCRNGRSPKETRWWFHDDKV 499
            ISILSMLSSS  KQRPADNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct:  118 ISILSMLSSSPAKQRPADNDRYVKNCKNGRSPKETRWWFHDDKV 161
[Close]
BLAST of CF504276 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.842e-18
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = -3 
Query:  368 ISILSMLSSSTVKQRPADNDRYVKNCRNGRSPKETRWWFHDDKV 499
            ISILSMLSSS  KQRP DNDRYVKNC+NGRSPKETRWWFHDDKV
Sbjct:  118 ISILSMLSSSPEKQRPTDNDRYVKNCKNGRSPKETRWWFHDDKV 161
[Close]
BLAST of CF504276 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.214e-15
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = -3 
Query:  368 ISILSMLSSSTVKQRPADNDRYVKNCRNGRSPKETRWWFHDDKV 499
            +SILSMLSSS+VKQ+P DND Y+KNC++GRSPKETRW FHDDKV
Sbjct:  118 LSILSMLSSSSVKQKPKDNDHYLKNCKHGRSPKETRWRFHDDKV 161
The following BLAST results are available for this feature:
BLAST of CF504276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UBC16_ARATH1.580e-1893.18Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UBC15_ARATH1.580e-1893.18Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBC18_ARATH7.842e-1890.91Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]
UBC17_ARATH6.214e-1579.55Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-765 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504276 ID=CF504276; Name=CF504276; organism=Citrus sinensis; type=EST; length=501bp
TTTTTTTGTGCAAGAACCATGATTAGAAGGTTACAACTTTTCTTTTTCCC
CCTCCTATTTTTGATCCTCCATAGCATAGTTGATCGACGATCAAGTCTTA
TTAAGAAGCCCCAAGCAAAAGACACGATCTTTGTTCCTATTGATAATTAG
GATATCATTGAAATTATGAAACCTGTTACGGGAGGGCAGTACAACCAAAA
TATAAAATCATCCCGAGTACAGAGCAAGTGAAAACATAAAAAACAGTGGA
CAGGTTTTTATAGGCATAGCAATGGCAGCCCCCTTTCCAGATGCCTTCCA
CGAATCTTTCCCAAAACCCTCCATTTTATACACAGGTTACAGCTAATTGA
TACTTCTTCTATCATTACACTTTATCATCATGGAACCACCATCTTGTCTC
CTTTGGAGATCTCCCATTCCTACAGTTCTTCACATAACGGTCATTATCGG
CGGGCCGTTGCTTCACGGTTGAGCTTGACAACATGGAGAGAATGCTGATA
C
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