CF504326

Overview
NameCF504326
Unique NameCF504326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504326 vs. ExPASy Swiss-Prot
Match: CML44_ARATH (Probable calcium-binding protein CML44 OS=Arabidopsis thaliana GN=CML44 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 8.464e-17
Identity = 53/124 (42.74%), Postives = 77/124 (62.10%), Query Frame = 1
Query:   97 TADLQRIFKQLDKNGDDQVSLEELNWLLERIG-VRLSLEELESFVGKSSLDLNEFL-FFWKSI-----SKQNNNKVDDHEVKXXXXXXXXXXXXXXXXSDLLEAFNVFDLNGDGFISCEELQNV 447
            T DL+R+FK LDKN D  V+L+EL W+L+++G    + +ELE  VGK SLDL+EFL F++ ++     SK+N + V D++                    +  AFNVFD+NGDG+IS EEL++V
Sbjct:    8 TNDLRRMFKTLDKNQDGLVTLDELLWILDKLGWAEHTPDELELIVGKQSLDLDEFLRFYYDAVLDSKGSKKNIDVVADND------------------EAIARAFNVFDVNGDGYISAEELRDV 113          
BLAST of CF504326 vs. ExPASy Swiss-Prot
Match: CML5_ARATH (Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.818e-12
Identity = 40/122 (32.79%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  100 ADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKXXXXXXXXXXXXXXXXSDLLEAFNVFDLNGDGFISCEELQNV 447
            ++L+R+F+  DKNGD +++ EELN  LE +G+ +  ++L   +      G   +D++EF   + SI  +++N  +  E                   D+ +AFNVFD +GDGFI+ EEL++V
Sbjct:   64 SELKRVFQMFDKNGDGRITKEELNDSLENLGIYIPDKDLTQMIHKIDANGDGCVDIDEFESLYSSIVDEHHNDGETEE------------------EDMKDAFNVFDQDGDGFITVEELKSV 167          
BLAST of CF504326 vs. ExPASy Swiss-Prot
Match: CML42_ARATH (Calcium-binding protein CML42 OS=Arabidopsis thaliana GN=CML42 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.314e-11
Identity = 47/132 (35.61%), Postives = 62/132 (46.97%), Query Frame = 1
Query:   91 LHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQ-------NNNKVDDHEVKXXXXXXXXXXXXXXXXSDLLEAFNVFDLNGDGFISCEELQNV 447
            L+   LQRIF   DKNGD  +++EEL+  L R+G+   L +L+S V      G + L+ ++F    K++               DD                    SDL EAF VFD NGDGFIS  ELQ V
Sbjct:   25 LNALRLQRIFDLFDKNGDGFITVEELSQALTRLGLNADLSDLKSTVESYIQPGNTGLNFDDFSSLHKTLDDSFFGGACGGGENEDD------------PSSAAENESDLAEAFKVFDENGDGFISARELQTV 144          
BLAST of CF504326 vs. ExPASy Swiss-Prot
Match: CML6_ARATH (Calmodulin-like protein 6 OS=Arabidopsis thaliana GN=CML6 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.940e-11
Identity = 37/125 (29.60%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   91 LHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKXXXXXXXXXXXXXXXXSDLLEAFNVFDLNGDGFISCEELQNV 447
            + + +L R+F+  DK+GD +++ +ELN   + +G+ +  +EL   +      G   +D+ EF   +K+I  ++ ++V + ++K                    EAFNVFD NGDGFI+ +EL+ V
Sbjct:    1 MDSTELNRVFQMFDKDGDGKITTKELNESFKNLGIIIPEDELTQIIQKIDVNGDGCVDIEEFGELYKTIMVEDEDEVGEEDMK--------------------EAFNVFDRNGDGFITVDELKAV 105          
BLAST of CF504326 vs. ExPASy Swiss-Prot
Match: CML4_ARATH (Calmodulin-like protein 4 OS=Arabidopsis thaliana GN=CML4 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.940e-11
Identity = 40/121 (33.06%), Postives = 62/121 (51.24%), Query Frame = 1
Query:  103 DLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKXXXXXXXXXXXXXXXXSDLLEAFNVFDLNGDGFISCEELQNV 447
            DL+R+F+  DKNGD +++ EELN  LE +G+ +  ++L   +      G   +D+NEF   + SI ++                            D+ +AFNVFD +GDGFI+ EEL +V
Sbjct:   51 DLKRVFQMFDKNGDGRITKEELNDSLENLGIFMPDKDLIQMIQKMDANGDGCVDINEFESLYGSIVEEKEE------------------------GDMRDAFNVFDQDGDGFITVEELNSV 147          
The following BLAST results are available for this feature:
BLAST of CF504326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CML44_ARATH8.464e-1742.74Probable calcium-binding protein CML44 OS=Arabidop... [more]
CML5_ARATH2.818e-1232.79Calmodulin-like protein 5 OS=Arabidopsis thaliana ... [more]
CML42_ARATH5.314e-1135.61Calcium-binding protein CML42 OS=Arabidopsis thali... [more]
CML6_ARATH6.940e-1129.60Calmodulin-like protein 6 OS=Arabidopsis thaliana ... [more]
CML4_ARATH6.940e-1133.06Calmodulin-like protein 4 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-815 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504326 ID=CF504326; Name=CF504326; organism=Citrus sinensis; type=EST; length=448bp
TCCCCCGGGCTGCAGGCCAAATTGGACAAAGCTTCAATTTCTTATTTCTA
TTTATGTTCTTTGGTGATCGCCTTCGCCAAGATGTGTCCTCTTCACACGG
CTGACTTGCAAAGAATTTTCAAGCAGCTTGACAAAAATGGGGATGACCAA
GTGAGCCTAGAGGAGCTTAATTGGCTTCTTGAGAGAATTGGAGTTCGTTT
AAGCCTTGAAGAGCTTGAATCATTTGTGGGAAAATCAAGCCTGGATTTGA
ATGAATTCCTGTTCTTTTGGAAGTCCATATCAAAGCAAAACAATAATAAA
GTCGATGATCATGAGGTTAAGGATGAGATCAACGGCGACGACAACGAAAA
CGACGATGATGGCGAGATCAGTGATCTTCTAGAGGCGTTTAATGTGTTTG
ATTTGAATGGTGATGGGTTCATTTCTTGTGAAGAGCTTCAAAATGTTT
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