CF504343

Overview
NameCF504343
Unique NameCF504343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length242
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504343 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.041e-20
Identity = 54/78 (69.23%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:    4 PANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIPASNRHGVQGNSLNMVLNRTIGPVSIATLSSGGI 237
            P +EDRYLLFIDEL GRLVTLLGGRAAEEV YSGRISTGALDDI  +     +  +    LN  IGPVS+ATLS+GGI
Sbjct:  635 PTHEDRYLLFIDELHGRLVTLLGGRAAEEVVYSGRISTGALDDIRRATDMAYKAVA-EYGLNEKIGPVSVATLSAGGI 711
[Close]
BLAST of CF504343 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.776e-20
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    4 PANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIPASNRHGVQGNSLNMVLNRTIGPVSIATLSSGGI 237
            P +EDRYLLFIDEL GRLVTLLGGRAAEEV YSGRISTGA DDI  +     +  +    LN+ IGPVS+ATLS GGI
Sbjct:  631 PTSEDRYLLFIDELLGRLVTLLGGRAAEEVVYSGRISTGAFDDIRRATDMAYKAVA-EYGLNQKIGPVSVATLSGGGI 707
[Close]
BLAST of CF504343 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.350e-19
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    4 PANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIPASNRHGVQGNSLNMVLNRTIGPVSIATLSSGGI 237
            P  EDRYLLF+DEL GRLVTLLGGRAAEEV  SGR+STGALDDI  +     +  +    LN+ IGP+S+ATLS+GG+
Sbjct:  652 PTTEDRYLLFVDELRGRLVTLLGGRAAEEVVLSGRVSTGALDDIRRATDMAYKAVA-EYGLNQRIGPISVATLSNGGL 728
The following BLAST results are available for this feature:
BLAST of CF504343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FTSH9_ARATH1.041e-2069.23Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH7_ARATH1.776e-2067.95Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH7_ORYSJ3.350e-1962.82Cell division protease ftsH homolog 7, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-832 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504343 ID=CF504343; Name=CF504343; organism=Citrus sinensis; type=EST; length=242bp
ACTCCAGCAAATGAGGATAGATATCTGCTGTTCATTGATGAGTTATGTGG
TCGCCTGGTTACTCTACTTGGAGGACGTGCAGCAGAAGAAGTTGCTTATT
CCGGTCGTATTTCCACTGGTGCTCTTGATGACATACCGGCGAGCAACCGA
CATGGCGTACAAGGCAATAGCCTGAATATGGTCCTTAATCGGACAATAGG
CCCTGTGTCTATAGCCACACTTTCGAGTGGTGGGATTTGATG
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