CF504373

Overview
NameCF504373
Unique NameCF504373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length250
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6276 contig Csv1_Contig6276:32..281. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504373 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.683e-20
Identity = 54/83 (65.06%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    4 MAATTQASLFAPANFSTTKSSAPWKQS-SSFSVRPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGST 249
            MA  TQASLF PA  S  KSSAPWKQS +SFS + LK        I+AMAE +  T   EAPVGFTPP+LDPNTPSPIFGGST
Sbjct:    1 MAMATQASLFTPA-LSAPKSSAPWKQSLASFSPKQLKSTVSAPRPIRAMAE-EAATKEAEAPVGFTPPQLDPNTPSPIFGGST 81          
BLAST of CF504373 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.628e-16
Identity = 49/85 (57.65%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    4 MAATTQASLFAPANFSTTKSSAPWKQSS-SFSV-RPLKHNAPRTNTIKAMAE-GKTETPTKEAPVGFTPPELDPNTPSPIFGGST 249
            MA  TQASLF P       ++APWKQS  SFS  + LK     T  I+AMAE     T  K AP GFTPP+LDPNTPSPIFGGST
Sbjct:    1 MAMATQASLFTPPLSVPKSTTAPWKQSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATEEKPAPAGFTPPQLDPNTPSPIFGGST 85          
BLAST of CF504373 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.156e-14
Identity = 46/88 (52.27%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    4 MAATTQASLFAPANFSTTKS---SAPWKQSSSFSV---RPLKHNAPRTNTIKAMAEGKTETPTKEAPVGFTPPELDPNTPSPIFGGST 249
            MA  TQA+LF P+  ST KS   S PWKQSS+ S    +P    A  + + K  AE +T     EAP GF+PPELDP+TPSPIF GST
Sbjct:    1 MAMATQATLFTPS-LSTPKSTGISIPWKQSSTLSFLTSKPHLKAASSSRSFKVSAEAETSV---EAPAGFSPPELDPSTPSPIFAGST 84          
BLAST of CF504373 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.221e-13
Identity = 47/92 (51.09%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    4 MAATTQASLFAPANFST-----TKSSAPWKQSSS--FSVRPL-KHNAPRTNTIKAMAEGKTE--TPTKEAPVGFTPPELDPNTPSPIFGGST 249
            MA  TQA+LF+P++ S+     T+ +  +KQ S+  F+ +P  +H++ R     A AEGK    T TKEAP GFTPPELDPNTPSPIF GST
Sbjct:    1 MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFASKPASRHHSIRA---AAAAEGKAAAATETKEAPKGFTPPELDPNTPSPIFAGST 89          
BLAST of CF504373 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.406e-11
Identity = 39/81 (48.15%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   10 ATTQASLFAPANFSTTKSSAPWKQSSSFSVRPLKHNAPRTNTIKAMAEGKTETPT-KEAPVGFTPPELDPNTPSPIFGGST 249
            AT  A +F+PA  +TT S+       S S RP   +  +T       E  +  P  KEAPVGFTPP+LDPNTPSPIF GST
Sbjct:    2 ATQAAGIFSPA-ITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKEAPVGFTPPQLDPNTPSPIFAGST 81          
The following BLAST results are available for this feature:
BLAST of CF504373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSAD_NICSY6.683e-2065.06Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SOLLC2.628e-1657.65Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CUCSA7.156e-1452.27Photosystem I reaction center subunit II, chloropl... [more]
PSAD_SPIOL1.221e-1351.09Photosystem I reaction center subunit II, chloropl... [more]
PSAD2_ARATH7.406e-1148.15Photosystem I reaction center subunit II-2, chloro... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-862 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504373 ID=CF504373; Name=CF504373; organism=Citrus sinensis; type=EST; length=250bp
GCCATGGCCGCAACAACTCAAGCCTCTCTCTTCGCACCGGCCAACTTCTC
CACCACCAAATCCTCTGCGCCGTGGAAGCAATCATCATCATTTTCAGTAA
GGCCACTAAAACATAATGCCCCACGTACCAACACCATCAAGGCCATGGCT
GAGGGAAAAACAGAGACACCCACAAAAGAGGCTCCGGTGGGCTTCACCCC
ACCAGAACTGGACCCCAACACCCCATCTCCGATCTTCGGAGGCAGCACCG
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