CF504378

Overview
NameCF504378
Unique NameCF504378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length338
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504378 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.714e-45
Identity = 86/105 (81.90%), Postives = 92/105 (87.62%), Query Frame = 1
Query:    1 LKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDP 315
            LKPDLIAPGVNILA WTGA GPTGL SD R V FNIISGTSMSCPHVSGLAALLK+ HPEWSP+AI+SALMTTAY T  +GK LLDI+TG+PSTPFD GAGHV P
Sbjct:  502 LKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGHVSP 606          
BLAST of CF504378 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.661e-21
Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 LKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTAYSTNGNGKTLLDISTGQPSTPFDFGAGHVDPVQ 321
            +KPD+  PGV ILA W  +V P G    +R+  FNIISGTSMSCPH++G+A  +K  +P WSP+AIKSALMTTA   N         +   P   F +G+GHV+P++
Sbjct:  488 IKPDISGPGVEILAAWP-SVAPVG--GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN---------ARFNPQAEFAYGSGHVNPLK 582          
BLAST of CF504378 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.719e-19
Identity = 41/74 (55.41%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    1 LKPDLIAPGVNILAGWTGAVGPTGLESDKRHVSFNIISGTSMSCPHVSGLAALLKAAHPEWSPSAIKSALMTTA 222
            LKPD+ APG++ILA +T     TGL+ D +   F I+SGTSM+CPHV+G+AA +K+ HP+W+P+AIKSA++T+A
Sbjct:  496 LKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSA 569          
The following BLAST results are available for this feature:
BLAST of CF504378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUBL_ARATH2.714e-4581.90Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
CUCM1_CUCME4.661e-2148.60Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH9.719e-1955.41Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-867 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504378 ID=CF504378; Name=CF504378; organism=Citrus sinensis; type=EST; length=338bp
CTCAAACCAGATCTCATAGCACCAGGAGTCAATATCCTAGCTGGCTGGAC
TGGTGCAGTTGGTCCAACTGGGTTAGAAAGTGACAAGAGGCATGTAAGCT
TCAATATCATTTCTGGCACATCGATGTCATGTCCCCATGTAAGTGGGCTA
GCTGCACTCCTCAAGGCTGCTCACCCAGAATGGAGCCCCTCAGCCATTAA
GTCTGCTCTCATGACTACAGCCTACTCAACAAATGGCAATGGCAAAACCC
TACTAGACATTTCCACTGGACAACCATCAACGCCATTCGACTTTGGCGCT
GGACATGTAGATCCTGTACAGCTCTTGATCCTGGCCTT
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