CF504382

Overview
NameCF504382
Unique NameCF504382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: SY121_ARATH (Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.601e-64
Identity = 120/144 (83.33%), Postives = 135/144 (93.75%), Query Frame = 3
Query:    3 TRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAR 434
            TRTSV+NGLRKKL DSM+SFN LR+ ISSEYR+TVQRRY+TVTGENPDE+TLDRLISTGESE FLQKAIQEQGRGR+LDTINEIQERHDAVK +EKNL+ELHQVFLDMAVLV+ QG QLDDIES V RA+S++RGGT++LQTAR
Sbjct:  134 TRTSVLNGLRKKLMDSMDSFNRLRELISSEYRETVQRRYFTVTGENPDERTLDRLISTGESERFLQKAIQEQGRGRVLDTINEIQERHDAVKDIEKNLRELHQVFLDMAVLVEHQGAQLDDIESHVGRASSFIRGGTDQLQTAR 277          

HSP 2 Score: 24.2534 bits (51), Expect = 3.601e-64
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  439 YQLSTRKWTC 468
            YQ +TRKWTC
Sbjct:  279 YQKNTRKWTC 288          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: SY122_ARATH (Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 7.117e-56
Identity = 109/143 (76.22%), Postives = 123/143 (86.01%), Query Frame = 3
Query:    6 RTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAR 434
            RTSVVNGLRKKLKD ME F+ +R+ I++EY++TV R  +TVTGE PDE TL+RLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVK +EK+L ELHQVFLDMAVLV+ QG QLDDIE  V+RANS VR G +RL  AR
Sbjct:  134 RTSVVNGLRKKLKDEMEKFSRVRETITNEYKETVGRMCFTVTGEYPDEATLERLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDIEKSLNELHQVFLDMAVLVEHQGAQLDDIEGNVKRANSLVRSGADRLVKAR 276          

HSP 2 Score: 24.2534 bits (51), Expect = 7.117e-56
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  439 YQLSTRKWTC 468
            YQ +TRKWTC
Sbjct:  278 YQKNTRKWTC 287          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: SY124_ARATH (Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.140e-54
Identity = 105/156 (67.31%), Postives = 131/156 (83.97%), Query Frame = 3
Query:    3 TRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAREVSAKYPKMDLY 470
            TRTSVV+GL KKLKD M+SF  LR R+++EY++TV+RRY+T+TGE  DE+T++ LIS+GESE FLQKAIQEQGRG+ILDTI+EIQERHDAVK +EKNL ELHQVFLDMA LV++QG+QL+DIES V +A+S+VR GT++LQ ARE      K   Y
Sbjct:  123 TRTSVVSGLGKKLKDLMDSFQGLRARMNAEYKETVERRYFTITGEQADEQTIENLISSGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNDIESHVSKASSFVRRGTDQLQDAREYQKSSRKWTCY 278          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: SY125_ARATH (Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.193e-53
Identity = 104/156 (66.67%), Postives = 131/156 (83.97%), Query Frame = 3
Query:    3 TRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAREVSAKYPKMDLY 470
            TR+SVV+GL KKLKD M+SF  LR R+++EY++TV+RRY+T+TGE  DE+T+D LI++GESE FLQKAIQEQGRG+ILDTI+EIQERHDAVK +EKNL ELHQVFLDMA LV+AQG+QL++IES V +A+S+VR GT++LQ ARE      K   Y
Sbjct:  118 TRSSVVSGLGKKLKDLMDSFQGLRARMNNEYKETVERRYFTITGEKADEQTIDNLIASGESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVEAQGQQLNNIESHVAKASSFVRRGTDQLQDAREYQKSSRKWTCY 273          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: SY123_ARATH (Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.510e-48
Identity = 91/144 (63.19%), Postives = 123/144 (85.42%), Query Frame = 3
Query:    3 TRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAR 434
            TRTSVV+GL KKLKD M+ F  LR ++++EY++TV+RRY+TVTG+  DE+T+++LIS+GESE FLQKAIQEQGRG+++DT++EIQERHD VK +E++L ELHQVFLDMA LV+AQG  L+DIES V +A+S+V  GT++L  A+
Sbjct:  126 TRTSVVSGLGKKLKDMMDDFQRLRTKMATEYKETVERRYFTVTGQKADEETVEKLISSGESERFLQKAIQEQGRGQVMDTLSEIQERHDTVKEIERSLLELHQVFLDMAALVEAQGNMLNDIESNVSKASSFVMRGTDQLHGAK 269          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: SY132_ARATH (Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.556e-43
Identity = 88/146 (60.27%), Postives = 105/146 (71.92%), Query Frame = 3
Query:    3 TRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAREV 440
            +RT+    L+KKLKD M  F  LR+ I  EYRD V RR YTVTGE  DE T+D LI TG SE   QKAIQEQGRG+++DT+ EIQERHDAV+ LEK L +L Q+FLDMAVLV AQGE LD+IESQV  A  +V+ G   LQ A+ +
Sbjct:  124 SRTATTLSLKKKLKDKMAEFQVLRENIQQEYRDVVDRRVYTVTGERADEDTIDELIETGNSEQIFQKAIQEQGRGQVMDTLAEIQERHDAVRDLEKKLLDLQQIFLDMAVLVDAQGEMLDNIESQVSSAVDHVQSGNTALQRAKSL 269          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: SY131_ARATH (Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.581e-40
Identity = 82/143 (57.34%), Postives = 104/143 (72.73%), Query Frame = 3
Query:    3 TRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTA 431
            TRT+    ++KK KD +  F  LRQ I  EYR+ V+RR +TVTG+  DE+ +DRLI TG+SE   QKAI+EQGRG+I+DT+ EIQERHDAV+ LEK L +L QVFLDMAVLV AQGE LD+IE+ V  A  +V+ G  +L  A
Sbjct:  125 TRTATTIAVKKKFKDKISEFQTLRQNIQQEYREVVERRVFTVTGQRADEEAIDRLIETGDSEQIFQKAIREQGRGQIMDTLAEIQERHDAVRDLEKKLLDLQQVFLDMAVLVDAQGEMLDNIENMVSSAVDHVQSGNNQLTKA 267          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: SY111_ARATH (Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 9.808e-40
Identity = 78/145 (53.79%), Postives = 114/145 (78.62%), Query Frame = 3
Query:    3 TRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGES-ETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAR 434
            +RT+V NGLRKKLK+ M  F  LRQ++ SEY++TV+RRY+TVTGE+ +++ ++++I+     E FL +AIQE G+G++L+T+ EIQ+R+DA K +EK+L ELHQVFLDMAV+V++QGEQ+D+IE  V  A+ YV  G   L+TA+
Sbjct:  131 SRTAVTNGLRKKLKEVMMEFQGLRQKMMSEYKETVERRYFTVTGEHANDEMIEKIITDNAGGEEFLTRAIQEHGKGKVLETVVEIQDRYDAAKEIEKSLLELHQVFLDMAVMVESQGEQMDEIEHHVINASHYVADGANELKTAK 275          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: SY112_ARATH (Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 5.394e-30
Identity = 64/149 (42.95%), Postives = 101/149 (67.79%), Query Frame = 3
Query:    3 TRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAREVSAK 449
            TRTS+ NG+RKKL+D+M  F+ LR+RI ++YR+ ++R+Y+  TGE P  + ++++IS   S + L K  + +    +     + +ERH+AV  ++++L  LHQVFLDMAVLV+ QG+++DDIE+ V  A S+V GGT  L  A ++  K
Sbjct:  135 TRTSITNGVRKKLRDTMSEFHRLRERIFADYREDLKRKYFLATGEEPSNEDMEKMISGSGSCSDLVKTFEVKPEMDL-----KTKERHEAVNDIKRSLNRLHQVFLDMAVLVETQGDRIDDIEANVANAGSFVSGGTNSLYYANQMKKK 278          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: STX1A_DROME (Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.753e-15
Identity = 45/144 (31.25%), Postives = 81/144 (56.25%), Query Frame = 3
Query:   27 LRKKLKDSMESFNELRQRISSEYRDTVQ---RRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAREVSAK 449
            L +K  + M  +N    R  ++YR+  +   +R   +TG   ++  L++++  G S  F Q  I E  + +   T+ +I+ RH  +  LE +++ELH +F+DMA+LV++QGE +D IE  V+ A  YV+  T+  + A +  +K
Sbjct:  126 LSRKFVEVMTEYN----RTQTDYRERCKGRIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIMETQQAK--QTLADIEARHQDIMKLETSIKELHDMFMDMAMLVESQGEMIDRIEYHVEHAMDYVQTATQDTKKALKYQSK 263          
The following BLAST results are available for this feature:
BLAST of CF504382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
SY121_ARATH3.601e-6483.33Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=... [more]
SY122_ARATH7.117e-5676.22Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=... [more]
SY124_ARATH3.140e-5467.31Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=... [more]
SY125_ARATH1.193e-5366.67Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=... [more]
SY123_ARATH1.510e-4863.19Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=... [more]
SY132_ARATH5.556e-4360.27Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=... [more]
SY131_ARATH2.581e-4057.34Putative syntaxin-131 OS=Arabidopsis thaliana GN=S... [more]
SY111_ARATH9.808e-4053.79Syntaxin-related protein KNOLLE OS=Arabidopsis tha... [more]
SY112_ARATH5.394e-3042.95Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=... [more]
STX1A_DROME3.753e-1531.25Syntaxin-1A OS=Drosophila melanogaster GN=Syx1A PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-871 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504382 ID=CF504382; Name=CF504382; organism=Citrus sinensis; type=EST; length=509bp
GGACCAGGACCTCCGTGGTCAACGGGCTGAGGAAGAAGCTGAAGGACTCG
ATGGAGAGTTTTAACGAGTTGAGGCAGAGGATTTCGTCCGAGTATAGGGA
CACCGTTCAGAGGAGGTACTATACGGTCACCGGAGAGAATCCCGACGAGA
AGACCTTAGATCGCTTGATTTCTACTGGAGAGAGTGAAACATTCTTGCAG
AAAGCAATTCAGGAGCAAGGAAGGGGAAGAATTTTGGACACCATAAATGA
GATACAAGAGAGGCATGATGCCGTGAAAGTGCTGGAGAAAAATCTTCAGG
AATTGCACCAAGTTTTCCTAGACATGGCGGTATTGGTCCAGGCCCAAGGT
GAACAATTGGACGACATTGAGAGCCAGGTGCAACGAGCTAATTCATATGT
CAGAGGCGGGACCGAGAGATTGCAAACAGCCCGGGAAGTATCAGCTAAGT
ACCCGAAAATGGACCTGTATCGCCATCACAATATTGCTAATCATAATCCT
GTTTGTGGG
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