CF504423

Overview
NameCF504423
Unique NameCF504423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length406
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504423_ssr37 microsatellite CF504423_ssr37:37..46. BLAST: Citrus ESTs to Prunus persica proteins V1
CF504423_ssr303 microsatellite CF504423_ssr303:303..317. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12329 contig Csv1_Contig12329:39..443. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504423 vs. ExPASy Swiss-Prot
Match: SAP5_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Arabidopsis thaliana GN=SAP5 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.246e-13
Identity = 36/46 (78.26%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  130 MAQKTEKEETEFKVPETLT-----LCVNNCGFTGNPATNNMCQKCF 252
            MAQ+TEKEETEFKV ETLT     LC NNCG T NPATNNMCQKCF
Sbjct:    1 MAQRTEKEETEFKVLETLTTTTTTLCTNNCGVTANPATNNMCQKCF 46
The following BLAST results are available for this feature:
BLAST of CF504423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SAP5_ARATH1.246e-1378.26Zinc finger A20 and AN1 domain-containing stress-a... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-912 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504423 ID=CF504423; Name=CF504423; organism=Citrus sinensis; type=EST; length=406bp
CTCTCTCGAACACCAAACCCTTCGCCCCATCACCCCCTCTCTCTCTAGAA
CTCTCACTTCTCTTCGATTTAATCCCCTCTGTCTCCAAAGCTCTTAATTG
GAAAAAAAAAAAGAGAGTTGTTCTCAGAAATGGCTCAGAAAACAGAAAAA
GAAGAGACAGAGTTCAAGGTTCCTGAAACTTTGACTCTTTGCGTAAACAA
CTGTGGCTTCACCGGTAATCCAGCCACAAATAATATGTGCCAGAAATGTT
TCAACGCAACCGCCACCACCACCGCAAGCGCCGTTTCTGGTTCGAGTACC
AACGGCGGCGGCGGCGGAGGAAGCGGTGTAACGATCATGAAGTTTTCTAG
CGAGAAATCTTTGAGATCTCGGCCTATCATCCGGTCTGGGTCATCCGATG
CTGCCG
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