CF504426

Overview
NameCF504426
Unique NameCF504426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6956 contig Csv1_Contig6956:952..1439. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504426 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 6.974e-61
Identity = 112/146 (76.71%), Postives = 126/146 (86.30%), Query Frame = 3
Query:   45 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEK 482
            MA+EICVKAAVGAPD LGDCPFSQRALLTLEEK + YK HLIN+SDKPQWFL+ISP+GKVPV+K DDKWV DSDVIV I+EEKYP+P L  P EFASVGS IF +F  FLKSKD NDG+E ALL EL+AL+ HLK+H GPFIAGE+
Sbjct:    1 MALEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGER 146          
BLAST of CF504426 vs. ExPASy Swiss-Prot
Match: CLIC6_RAT (Chloride intracellular channel protein 6 OS=Rattus norvegicus GN=Clic6 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 47/140 (33.57%), Postives = 68/140 (48.57%), Query Frame = 3
Query:   51 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT 452
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD ND  E+ LL  LK LD +L +
Sbjct:  379 ITLFVKAGSDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLVPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANDIYEKNLLRALKKLDSYLNS 517          
BLAST of CF504426 vs. ExPASy Swiss-Prot
Match: CLIC6_RABIT (Chloride intracellular channel protein 6 OS=Oryctolagus cuniculus GN=CLIC6 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 46/140 (32.86%), Postives = 69/140 (49.29%), Query Frame = 3
Query:   51 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPS----LTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT 452
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD     D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E++LL+ LK LD +L +
Sbjct:  404 ITLFVKAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGDVKTDVNKIEEFLEEKLAPPRYPKLATQHPESNSAGNDVFAKFSAFIKNTKKDANEIYEKSLLKALKKLDAYLNS 542          
BLAST of CF504426 vs. ExPASy Swiss-Prot
Match: CLIC6_MOUSE (Chloride intracellular channel protein 6 OS=Mus musculus GN=Clic6 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 46/140 (32.86%), Postives = 68/140 (48.57%), Query Frame = 3
Query:   51 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT 452
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E+ LL  LK LD +L +
Sbjct:  363 ITLFVKAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLVPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANEIYEKNLLRALKKLDSYLNS 501          
The following BLAST results are available for this feature:
BLAST of CF504426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DHAR1_ARATH6.974e-6176.71Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
CLIC6_RAT3.880e-1133.57Chloride intracellular channel protein 6 OS=Rattus... [more]
CLIC6_RABIT5.068e-1132.86Chloride intracellular channel protein 6 OS=Orycto... [more]
CLIC6_MOUSE8.645e-1132.86Chloride intracellular channel protein 6 OS=Mus mu... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-915 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504426 ID=CF504426; Name=CF504426; organism=Citrus sinensis; type=EST; length=488bp
CTAACAGCAACATACACTCTCTCTGATCACTCAATTCCGCAAAAATGGCC
GTGGAGATTTGTGTGAAAGCCGCTGTTGGCGCTCCTGATATTCTCGGGGA
CTGCCCATTTTCCCAAAGAGCTTTGCTTACTTTGGAGGAAAAGAAAGTTC
CATACAAGCGTCACCTCATCAATATCAGTGACAAGCCTCAATGGTTTTTG
GAGATAAGCCCAGAAGGGAAAGTACCTGTGGTAAAGTTTGATGACAAGTG
GGTGGCTGACTCTGATGTGATTGTTAGAATTATTGAGGAGAAGTATCCTG
AGCCTTCTCTTACTAATCCTCCTGAATTTGCCTCTGTTGGATCAAAGATA
TTCCCATCTTTTGTCAATTTCTTGAAGAGCAAGGACCCAAATGATGGGAC
AGAGCAAGCTTTGCTGGAGGAATTGAAAGCATTGGATGAGCATCTTAAGA
CTCATGGAGGGCCATTCATTGCTGGAGAGAAGGGCACT
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