CF504463

Overview
NameCF504463
Unique NameCF504463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length336
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9466 contig Csv1_Contig9466:23..358. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 1.390e-49
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1 
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI PLWRHYFQNTQGLIFV DSNDRD
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98
[Close]
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 1.390e-49
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 1 
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI PLWRHYFQNTQGLIFV DSNDRD
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98
[Close]
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 3.098e-49
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 1 
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI PLWRHYFQNTQGLIFV DSNDRD
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98
[Close]
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 5.284e-49
Identity = 95/98 (96.94%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            MGLSF KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI PLWRHYFQNTQGLIFV DSNDRD
Sbjct:    1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98
[Close]
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 9.012e-49
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 1 
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI PLWRHYFQNTQGLIFV DSNDR+
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 98
[Close]
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 9.012e-49
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 1 
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI PLWRHYFQNTQGLIFV DSNDR+
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 98
[Close]
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 9.012e-49
Identity = 95/98 (96.94%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            MGLSF KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI PLWRHYFQNTQGLIFV DSNDRD
Sbjct:    1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98
[Close]
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 4.473e-48
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            MGL+ +KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI PLWRHYFQNTQGLIFV DSNDRD
Sbjct:    1 MGLTISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98
[Close]
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 4.473e-48
Identity = 93/98 (94.90%), Postives = 94/98 (95.92%), Query Frame = 1 
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            MGLSFTKL  RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI PLWRHYFQNTQGLIFV DSNDRD
Sbjct:    1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98
[Close]
BLAST of CF504463 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 9.964e-48
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:   43 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIPPLWRHYFQNTQGLIFVGDSNDRD 336
            MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILY+LKLGEIVTTIPTIGFNVETVEY+ ISFTVWDVGGQDKI PLWRHYFQNTQGLIFV DSNDRD
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98
The following BLAST results are available for this feature:
BLAST of CF504463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
ARF_VIGUN1.390e-4997.96ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_DAUCA1.390e-4997.96ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF_MAIZE3.098e-4996.94ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF2_ARATH5.284e-4996.94ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF2_ORYSJ9.012e-4995.92ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ9.012e-4995.92ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_ARATH9.012e-4996.94ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF1_SOLTU4.473e-4894.90ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARF1_SALBA4.473e-4894.90ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_CATRO9.964e-4894.90ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-952 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504463 ID=CF504463; Name=CF504463; organism=Citrus sinensis; type=EST; length=336bp
CTTAAGCAGCCTCCTCCTTCAGATCTCGTGAGATAACAGAAAATGGGGCT
GTCATTTACGAAACTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATGCGAA
TTCTGATGGTGGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTACAAG
CTCAAGCTCGGTGAGATTGTGACAACCATTCCTACCATTGGTTTCAACGT
GGAGACTGTGGAATATAAGAACATTAGCTTCACTGTTTGGGATGTTGGGG
GTCAGGATAAGATTCCTCCTTTGTGGAGACATTACTTTCAAAACACTCAA
GGACTTATCTTTGTGGGTGATAGCAATGATCGTGAC
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