CF504484

Overview
NameCF504484
Unique NameCF504484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5955 contig Csv1_Contig5955:269..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504484 vs. ExPASy Swiss-Prot
Match: VATG_CITLI (V-type proton ATPase subunit G OS=Citrus limon GN=VATG PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.787e-30
Identity = 66/88 (75.00%), Postives = 68/88 (77.27%), Query Frame = 1
Query:  103 LLPRARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 366
            ++  ARNAKMARL                QVEREFQRKLAES GDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQM LKHVTTVKN
Sbjct:   23 IVAAARNAKMARLKQAKEEAEREIAEYRAQVEREFQRKLAESVGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMFLKHVTTVKN 110          

HSP 2 Score: 28.1054 bits (61), Expect = 1.787e-30
Identity = 14/31 (45.16%), Postives = 15/31 (48.39%), Query Frame = 3
Query:   36 MASNRGHGGIXXXXXXXXXXXHIVAACQKCK 128
            M SNRG GGI           HIVAA +  K
Sbjct:    1 MTSNRGQGGIQQLLAAEQEAQHIVAAARNAK 31          
BLAST of CF504484 vs. ExPASy Swiss-Prot
Match: VAGT1_ARATH (V-type proton ATPase subunit G1 OS=Arabidopsis thaliana GN=VHA-G1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.062e-20
Identity = 51/84 (60.71%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  115 ARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 366
            AR AKMARL                Q E++FQRKL E+SGDSGANVKRLEQET+ KI  LK  A +I  DVV+MLLKHVTTVKN
Sbjct:   27 ARTAKMARLKQAKEEAEKEIAEYKAQTEQDFQRKLEETSGDSGANVKRLEQETDTKIEQLKNEASRISKDVVEMLLKHVTTVKN 110          

HSP 2 Score: 22.7126 bits (47), Expect = 6.062e-20
Identity = 12/31 (38.71%), Postives = 13/31 (41.94%), Query Frame = 3
Query:   36 MASNRGHGGIXXXXXXXXXXXHIVAACQKCK 128
            M SNRG G I           HIV A +  K
Sbjct:    1 MESNRGQGSIQQLLAAEVEAQHIVNAARTAK 31          
BLAST of CF504484 vs. ExPASy Swiss-Prot
Match: VATG1_TOBAC (V-type proton ATPase subunit G 1 OS=Nicotiana tabacum GN=VATG1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.511e-19
Identity = 50/88 (56.82%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  103 LLPRARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 366
            ++  AR AK ARL                 +E EFQRKL ++SGDSGANVKRLEQET+ KI HLK  AE++  DVVQMLL+HVTTVKN
Sbjct:   23 IVNNARTAKQARLKQAKEEAEKEIAEFRAYMEAEFQRKLEQTSGDSGANVKRLEQETDAKIEHLKTEAERVSPDVVQMLLRHVTTVKN 110          
BLAST of CF504484 vs. ExPASy Swiss-Prot
Match: VATG2_TOBAC (V-type proton ATPase subunit G 2 OS=Nicotiana tabacum GN=VATG2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.167e-17
Identity = 46/84 (54.76%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  115 ARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 366
            AR  K AR+                 +E EFQR + ++SGDSGANVKRLEQET  KI HLK  AE I +DVVQMLL+ VTTVKN
Sbjct:   28 ARTGKQARMKQAKEEAEKEIAEFRAYMEAEFQRNVEQTSGDSGANVKRLEQETFAKIQHLKTEAESISHDVVQMLLRQVTTVKN 111          
BLAST of CF504484 vs. ExPASy Swiss-Prot
Match: VATG2_ARATH (V-type proton ATPase subunit G2 OS=Arabidopsis thaliana GN=VHA-G2 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.729e-15
Identity = 46/93 (49.46%), Postives = 55/93 (59.14%), Query Frame = 1
Query:   88 KKLNTLLPRARNAKMARLXXXXXXXXXXXXXXXXQVEREFQRKLAESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 366
            ++   ++  AR AKM RL                  E+ FQRKL  +SGDSGANVKRLEQET+ KI  LK  A +I  DVV MLLK+VTTV N
Sbjct:   14 REAQQIVNAARTAKMTRLKQAKEEAETEVAEHKTSTEQGFQRKLEATSGDSGANVKRLEQETDAKIEQLKNEATRISKDVVDMLLKNVTTVNN 106          
The following BLAST results are available for this feature:
BLAST of CF504484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
VATG_CITLI1.787e-3075.00V-type proton ATPase subunit G OS=Citrus limon GN=... [more]
VAGT1_ARATH6.062e-2060.71V-type proton ATPase subunit G1 OS=Arabidopsis tha... [more]
VATG1_TOBAC1.511e-1956.82V-type proton ATPase subunit G 1 OS=Nicotiana taba... [more]
VATG2_TOBAC9.167e-1754.76V-type proton ATPase subunit G 2 OS=Nicotiana taba... [more]
VATG2_ARATH1.729e-1549.46V-type proton ATPase subunit G2 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-973 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504484 ID=CF504484; Name=CF504484; organism=Citrus sinensis; type=EST; length=386bp
GAATCTTGGCCGCAAGCAAGTCTCAACAGGAAAGCATGGCATCTAATCGG
GGTCATGGTGGAATTCAGCAATTGCTGGCTGCTGAACAAGAAGCTCAACA
CATTGTTGCCGCGTGCCAGAAATGCAAAAATGGCTAGACTGAGGCAAGCC
AAAGAAGAGGCTGAAAGGGAGATTGCTGAACATCGAGCTCAGGTGGAGCG
TGAGTTCCAGAGGAAACTTGCAGAGAGTAGTGGAGATTCAGGTGCGAATG
TGAAGAGGCTTGAACAAGAAACAGAGGTAAAAATTCATCATCTGAAGGCT
GGGGCTGAGAAAATTCAATATGATGTTGTCCAAATGCTCCTCAAGCATGT
TACAACTGTGAAGAATTAAGCTCTGATGTTATCTTT
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