CF504491

Overview
NameCF504491
Unique NameCF504491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504491 vs. ExPASy Swiss-Prot
Match: P2C25_ARATH (Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana GN=At2g30020 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.723e-24
Identity = 73/183 (39.89%), Postives = 90/183 (49.18%), Query Frame = 1 
Query:    1 VFSPSSSLFCNKTSVISQSPEKTLNLPLTHVKFXXXXXXXXXXXXXXXXXRFRLQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQTILKRKRPAKLDIP------VASMSFGGLVTPXXXXXXXXXXXXXGFYSVYCKRGRREAMEDRFSALGDFQGDSKQAVFGIFDGHGGAKAAE 531
            VFSPSSSLFCNK+S++S SP+++L+L L+H K                   FRL+                                     +LKRKRP +LDIP      VA +S    V                 YSVYCKRGRREAMEDRFSA+ +  GD KQA+FG++DGHGG KAAE
Sbjct:   12 VFSPSSSLFCNKSSILS-SPQESLSLTLSHRKPQTSSPSSPSTTVSSPKSPFRLRFQKPPSGFAPGPLSFGSESVSASSPPGG---------VLKRKRPTRLDIPIGVAGFVAPISSSAAVAATPREECREVEREGDGYSVYCKRGRREAMEDRFSAITNLHGDRKQAIFGVYDGHGGVKAAE 184
[Close]
BLAST of CF504491 vs. ExPASy Swiss-Prot
Match: P2C02_ARATH (Probable protein phosphatase 2C 2 OS=Arabidopsis thaliana GN=At1g07160 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.413e-18
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:  274 TILKRKRPAKLDIPVASMSFGGLV----TPXXXXXXXXXXXXXGFYSVYCKRGRREAMEDRFSALGDFQGDSKQAVFGIFDGHGGAKAAE 531
            +ILKRKRP  LDIPVA +     +    TP               YSVYCKRG+REAMEDRFSA+ + QGD KQA+FG++DGHGG  AAE
Sbjct:   80 SILKRKRPTTLDIPVAPVGIAAPISNADTPREESRAVEREGDG--YSVYCKRGKREAMEDRFSAITNLQGDPKQAIFGVYDGHGGPTAAE 167
[Close]
BLAST of CF504491 vs. ExPASy Swiss-Prot
Match: P2C30_ARATH (Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana GN=PP2C5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.199e-13
Identity = 43/92 (46.74%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:  271 QTILKRKRPAKLDIPVASMSFGGLVTPXXXXXXXXXXXXX---GFYSVYCKRGRREAMEDRFSALGDFQGDS--KQAVFGIFDGHGGAKAAE 531
            +T+LKRKRP  LD+  A        T                 G+YSVYCKRGRR  MEDR+ A  D   D   K A FG+FDGHGG+KAAE
Sbjct:   84 ETVLKRKRPPMLDLTAAPTVASWCSTTRETAEKGAEVVEAEEDGYYSVYCKRGRRGPMEDRYFAAVDRNDDGGYKNAFFGVFDGHGGSKAAE 175
The following BLAST results are available for this feature:
BLAST of CF504491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
P2C25_ARATH1.723e-2439.89Probable protein phosphatase 2C 25 OS=Arabidopsis ... [more]
P2C02_ARATH1.413e-1854.44Probable protein phosphatase 2C 2 OS=Arabidopsis t... [more]
P2C30_ARATH5.199e-1346.74Probable protein phosphatase 2C 30 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-980 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504491 ID=CF504491; Name=CF504491; organism=Citrus sinensis; type=EST; length=531bp
GTATTTTCGCCATCATCGTCTCTGTTTTGCAACAAAACGTCCGTAATCTC
TCAGTCTCCAGAAAAAACCCTGAATTTGCCATTAACCCATGTAAAGTTTT
CGCCTTCTTCATCATTATCACCCACTTCGCCTTCGCCTTCTTCTCCGCTT
CGTTTTCGCCTTCAAAAGCCACCAACTGGGCTCTCCTCTTCTTCCTCTGC
TGCTTGTTCTTCGTCCTCCTCCTCGTCACCCTCAGCCTTGGCGACCGGCT
CGGGGACAGCATCTCAGCAGCAGACGATATTGAAGAGAAAGAGGCCGGCG
AAGCTGGATATTCCGGTCGCTTCGATGAGTTTTGGAGGGCTGGTGACTCC
AAGAGAGGTGAAAAGAGACGAGGTCGAAGATGAGAGAGATGGCTTTTATT
CGGTTTATTGTAAACGAGGAAGAAGAGAAGCGATGGAGGATCGTTTCTCT
GCTCTTGGTGATTTTCAAGGAGATTCCAAACAGGCAGTTTTTGGTATTTT
TGATGGACATGGAGGTGCCAAAGCTGCTGAG
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