CF504516

Overview
NameCF504516
Unique NameCF504516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504516 vs. ExPASy Swiss-Prot
Match: SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.460e-34
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = 2 
Query:   98 VGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 298
            VGTGHADL+RFEWAVNIQRDSYASYIGHYPML+YFAIAENESIGRE YNFMQKMLLPCGLPPERE++
Sbjct:   21 VGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREEE 87

HSP 2 Score: 27.7202 bits (60), Expect = 5.460e-34
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 3 
Query:   36 MQASDRFNINSQ 71
            MQASDRFNINSQ
Sbjct:    1 MQASDRFNINSQ 12

HSP 3 Score: 20.7866 bits (42), Expect = 5.460e-34
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1 
Query:   73 LEHLQAKY 96
            LEHLQAKY
Sbjct:   13 LEHLQAKY 20
[Close]
BLAST of CF504516 vs. ExPASy Swiss-Prot
Match: SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.460e-34
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 2 
Query:   98 VGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 298
            VGTGHADL+RFEW VNIQRDSYASYIGHYPML+YFAIAENESIGRE YNFMQKMLLPCGLPPERED+
Sbjct:   21 VGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIGRERYNFMQKMLLPCGLPPEREDE 87

HSP 2 Score: 27.7202 bits (60), Expect = 5.460e-34
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 3 
Query:   36 MQASDRFNINSQ 71
            MQASDRFNINSQ
Sbjct:    1 MQASDRFNINSQ 12

HSP 3 Score: 20.7866 bits (42), Expect = 5.460e-34
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1 
Query:   73 LEHLQAKY 96
            LEHLQAKY
Sbjct:   13 LEHLQAKY 20
[Close]
BLAST of CF504516 vs. ExPASy Swiss-Prot
Match: SF3B5_DROME (Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.248e-19
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 2 
Query:   98 VGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 298
            +GTGHAD  +FEW  N  RDS ASY+GHY +L YFAIAENES  R  +N M++ML PCG PPE+ +D
Sbjct:   19 IGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKARVRFNLMERMLQPCGPPPEKLED 85
[Close]
BLAST of CF504516 vs. ExPASy Swiss-Prot
Match: SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.134e-18
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 2 
Query:   98 VGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 298
            +GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Sbjct:   19 IGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
[Close]
BLAST of CF504516 vs. ExPASy Swiss-Prot
Match: SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.134e-18
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 2 
Query:   98 VGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 298
            +GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML PCG P ++ ++
Sbjct:   19 IGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPCGPPADKPEE 85
[Close]
BLAST of CF504516 vs. ExPASy Swiss-Prot
Match: SF3B5_MOUSE (Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.858e-17
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:   98 VGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 298
            +GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES  R  +N M+KML P G P ++ ++
Sbjct:   19 IGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESKARVRFNLMEKMLQPSGPPADKPEE 85
[Close]
BLAST of CF504516 vs. ExPASy Swiss-Prot
Match: SF3B5_DICDI (Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.793e-16
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:   98 VGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD 298
            VGTGHAD+++ EW  N  RDS +S+IGH   L+ F+IAENES+GR  YN + KM+ PCG  P+ +D+
Sbjct:   19 VGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESVGRVRYNTLTKMISPCGPAPKIKDN 85
The following BLAST results are available for this feature:
BLAST of CF504516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SF3BB_ARATH5.460e-3492.54Uncharacterized protein At4g14342 OS=Arabidopsis t... [more]
SF3BA_ARATH5.460e-3492.54Uncharacterized protein At3g23325 OS=Arabidopsis t... [more]
SF3B5_DROME4.248e-1961.19Probable splicing factor 3B subunit 5 OS=Drosophil... [more]
SF3B5_HUMAN6.134e-1856.72Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF... [more]
SF3B5_BOVIN6.134e-1856.72Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B... [more]
SF3B5_MOUSE8.858e-1755.22Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf... [more]
SF3B5_DICDI9.793e-1653.73Splicing factor 3B subunit 5 OS=Dictyostelium disc... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-005 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504516 ID=CF504516; Name=CF504516; organism=Citrus sinensis; type=EST; length=455bp
TTTCTCGTTATCATTCTCAAAAAAGCACAGCAAAAATGCAGGCGAGTGAT
AGGTTTAATATAAACTCCCAGCCTAGAGCATCTGCAAGCCAAATACCGTT
GGTACTGGCCATGCTGATTTGAACAGATTTGAATGGGCTGTGAACATTCA
GCGTGATAGCTATGCCTCGTATATTGGGCATTACCCTATGTTGGCCTATT
TTGCTATTGCCGAGAATGAATCTATTGGAAGGGAACACTATAACTTTATG
CAGAAAATGCTTTTGCCTTGCGGCTTACCCCCTGAAAGAGAAGATGATTG
AGAGTTTAGGATGCCCTTTCTGAGAAATGAAACATTTTGGGCTCCAGCTC
TCTCCAGGCTGAGGAGCATTTGTGATATATCTAGGTGTTCACTTCAAGGA
ACAATGTTCATGTGACACTGACAAAACTGTGTAGTAGTGTGTACTGAAAT
GAATG
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