CF504534

Overview
NameCF504534
Unique NameCF504534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length272
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504534_ssr63 microsatellite CF504534_ssr63:63..77. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:195..464. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504534 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.363e-12
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 3 
Query:  138 MSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVGDIQGSG 260
            MST FS++ AFSGPAPERINGRLAMIGFVAA+GV   +G G
Sbjct:   83 MSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQG 123

HSP 2 Score: 26.5646 bits (57), Expect = 3.363e-12
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 2 
Query:    5 YLPSLRRNVNLSVRCTA 55
            Y+P+LRRNV+L VR  A
Sbjct:   33 YIPTLRRNVSLKVRSMA 49
The following BLAST results are available for this feature:
BLAST of CF504534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ELI_PEA3.363e-1275.61Early light-induced protein, chloroplastic OS=Pisu... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-023 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504534 ID=CF504534; Name=CF504534; organism=Citrus sinensis; type=EST; length=272bp
CAAGTACTTGCCTAGTCTGCGTAGAAATGTCAACTTATCCGTGCGCTGCA
CGGCAGAGGATGAGCAGCAGCAGCAGCAGAAAGATGATCAACCAACCATA
CCGAAAGCCTGAGCCTCAGCCACCAAAGAAGCCGCGGATGAGCACGGGGT
TCTCTGAGGTGTTTGCGTTCAGCGGGCCGGCACCGGAGAGGATAAACGGG
AGGCTTGCGATGATTGGGTTCGTGGCTGCATTGGGGGTTGGAGATATCCA
AGGGTCAGGATGTGTTTGCCCC
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