CF504535

Overview
NameCF504535
Unique NameCF504535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length242
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5846 contig Csv1_Contig5846:863..1103. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF504535 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.190e-27
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:  121 VKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGR 240
            VK G+ RQ+EAFR+GFNQVFDITSLQIFTP ELD+LLCGR
Sbjct: 1717 VKRGVTRQIEAFRSGFNQVFDITSLQIFTPSELDYLLCGR 1756

HSP 2 Score: 68.1662 bits (165), Expect = 6.190e-27
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3 
Query:    3 DLCLDFTLPGYPDYILKPGDENVDINNLEEYISLVVDAT 119
            DL L+FTLPGYP+YIL+ GDE VDI NLEEYISLVVDAT
Sbjct: 1678 DLSLEFTLPGYPEYILRSGDEIVDITNLEEYISLVVDAT 1716
[Close]
BLAST of CF504535 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 7.795e-15
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:  121 VKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCG 237
            V  GI +Q+EAFR+GFNQVF I  L+IF   EL+ +LCG
Sbjct: 1343 VCNGIQKQVEAFRSGFNQVFSIEHLRIFNEEELETMLCG 1381

HSP 2 Score: 48.9062 bits (115), Expect = 7.795e-15
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 3 
Query:    3 DLCLDFTLPGYPDYILKPGDEN--VDINNLEEYISLVVDAT 119
            DLCL+F LPGY DY L P   N  V+++NLEEYI  +V+AT
Sbjct: 1302 DLCLEFALPGYTDYDLAPYSANDMVNLDNLEEYIKGIVNAT 1342
[Close]
BLAST of CF504535 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 3.162e-12
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 1 
Query:  130 GIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCG 237
            G+ RQ ++FR GF  VF ++ LQ F P ELD LLCG
Sbjct: 1833 GVSRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCG 1868

HSP 2 Score: 43.5134 bits (101), Expect = 3.162e-12
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 3 
Query:    3 DLCLDFTLPGYPDYILKPG--DENVDINNLEEYISLVV 110
            DL LDFTLPG+P+  LK G  D  V I+NLEEY+ LV+
Sbjct: 1789 DLGLDFTLPGFPNIELKKGGKDIPVTIHNLEEYLRLVI 1826
The following BLAST results are available for this feature:
BLAST of CF504535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UPL3_ARATH6.190e-2782.50E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
UPL4_ARATH7.795e-1558.97E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN3.162e-1255.56Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-024 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-19_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504535 ID=CF504535; Name=CF504535; organism=Citrus sinensis; type=EST; length=242bp
AAGATCTTTGCCTGGATTTTACTCTTCCTGGTTATCCAGACTATATTTTG
AAACCAGGAGATGAAAATGTTGACATTAATAACTTGGAGGAATACATATC
CTTGGTAGTTGATGCCACCTGTCAAGACAGGCATCATGCGGCAAATGGAA
GCTTTTAGAGCTGGCTTCAATCAGGTCTTTGACATCACATCATTACAAAT
ATTTACTCCTCATGAATTGGACCATCTGCTTTGTGGCCGTAC
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